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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0620300 |
| Transcript ID | Lj4g3v0620300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Poly(A)-binding protein [Medicago truncatula] gi|357475273|ref|XP_003607922.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | – | – | |
| PANTHER | 15 | 153 | 139 | 2.50E-120 | – | |
| PANTHER | 15 | 153 | 139 | 2.50E-120 | – | |
| Gene3D | 36 | 118 | 83 | 8.60E-26 | ||
| ProSiteProfiles | 37 | 115 | 79 | 18.547 | ||
| SUPERFAMILY | 37 | 206 | 170 | 3.58E-50 | ||
| TIGRFAM | 38 | 351 | 314 | 1.60E-155 | ||
| SMART | 38 | 111 | 74 | 4.5 | ||
| CDD | 38 | 117 | 80 | 1.54E-45 | – | |
| SMART | 38 | 111 | 74 | 1.60E-22 | ||
| Pfam | 39 | 109 | 71 | 3.50E-19 | ||
| Gene3D | 120 | 205 | 86 | 3.60E-26 | ||
| CDD | 123 | 199 | 77 | 1.06E-48 | – | |
| ProSiteProfiles | 125 | 197 | 73 | 18.206 | ||
| SMART | 126 | 198 | 73 | 1.60E-24 | ||
| SMART | 126 | 198 | 73 | 2.2 | ||
| Pfam | 127 | 195 | 69 | 9.50E-21 | ||
| Gene3D | 206 | 300 | 95 | 1.30E-30 | ||
| PANTHER | 215 | 309 | 95 | 2.50E-120 | – | |
| CDD | 215 | 294 | 80 | 3.33E-42 | – | |
| PANTHER | 215 | 309 | 95 | 2.50E-120 | – | |
| ProSiteProfiles | 216 | 293 | 78 | 19.758 | ||
| PRINTS | 216 | 231 | 16 | 9.20E-05 | ||
| SUPERFAMILY | 216 | 353 | 138 | 6.35E-36 | ||
| SMART | 217 | 289 | 73 | 4.80E-29 | ||
| SMART | 217 | 289 | 73 | 0.96 | ||
| Pfam | 218 | 286 | 69 | 2.60E-24 | ||
| Coils | 291 | 315 | 25 | – | – | |
| PRINTS | 306 | 323 | 18 | 9.20E-05 | ||
| Gene3D | 310 | 351 | 42 | 4.00E-14 | ||
| ProSiteProfiles | 319 | 356 | 38 | 8.569 | ||
| Pfam | 321 | 351 | 31 | 4.00E-06 | ||
| PRINTS | 324 | 339 | 16 | 9.20E-05 | ||
| PRINTS | 339 | 351 | 13 | 9.20E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of Lj4g3v0620300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0620300.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.