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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0620300 |
| Transcript ID | Lj4g3v0620300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: polyadenylate-binding protein 2-like [Glycine max] gi|356499763|ref|XP_003518706.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | – | – | |
| PANTHER | 15 | 153 | 139 | 5.70E-206 | – | |
| PANTHER | 15 | 153 | 139 | 5.70E-206 | – | |
| SUPERFAMILY | 19 | 122 | 104 | 5.43E-26 | ||
| Gene3D | 36 | 118 | 83 | 1.60E-25 | ||
| ProSiteProfiles | 37 | 115 | 79 | 18.547 | ||
| SMART | 38 | 111 | 74 | 1.60E-22 | ||
| SMART | 38 | 111 | 74 | 4.5 | ||
| CDD | 38 | 117 | 80 | 3.75E-45 | – | |
| TIGRFAM | 38 | 493 | 456 | 4.90E-195 | ||
| Pfam | 39 | 109 | 71 | 6.00E-19 | ||
| Gene3D | 120 | 205 | 86 | 6.50E-26 | ||
| CDD | 123 | 199 | 77 | 3.84E-50 | – | |
| ProSiteProfiles | 125 | 197 | 73 | 18.206 | ||
| SMART | 126 | 198 | 73 | 2.2 | ||
| SUPERFAMILY | 126 | 297 | 172 | 7.43E-50 | ||
| SMART | 126 | 198 | 73 | 1.60E-24 | ||
| Pfam | 127 | 195 | 69 | 1.60E-20 | ||
| Gene3D | 206 | 300 | 95 | 2.50E-30 | ||
| CDD | 215 | 294 | 80 | 3.20E-43 | – | |
| PRINTS | 216 | 231 | 16 | 7.80E-05 | ||
| ProSiteProfiles | 216 | 293 | 78 | 19.758 | ||
| SMART | 217 | 289 | 73 | 0.96 | ||
| SMART | 217 | 289 | 73 | 4.80E-29 | ||
| Pfam | 218 | 286 | 69 | 4.50E-24 | ||
| Coils | 291 | 315 | 25 | – | – | |
| PRINTS | 306 | 323 | 18 | 7.80E-05 | ||
| Gene3D | 309 | 401 | 93 | 4.50E-32 | ||
| SUPERFAMILY | 315 | 412 | 98 | 2.69E-28 | ||
| PANTHER | 318 | 506 | 189 | 5.70E-206 | – | |
| CDD | 318 | 396 | 79 | 3.40E-48 | – | |
| PANTHER | 318 | 506 | 189 | 5.70E-206 | – | |
| ProSiteProfiles | 319 | 396 | 78 | 19.434 | ||
| SMART | 320 | 392 | 73 | 1.70E-25 | ||
| SMART | 320 | 392 | 73 | 0.17 | ||
| Pfam | 321 | 389 | 69 | 5.60E-19 | ||
| PRINTS | 324 | 339 | 16 | 7.80E-05 | ||
| PRINTS | 339 | 351 | 13 | 7.80E-05 | ||
| MobiDBLite | 476 | 506 | 31 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of Lj4g3v0620300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0620300.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.