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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0756940 |
| Transcript ID | Lj4g3v0756940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: telomere repeat-binding factor 2-like [Cicer arietinum] gi|502152722|ref|XP_004509061.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 174 | 174 | 3.10E-111 | – | |
| ProSiteProfiles | 1 | 61 | 61 | 13.669 | ||
| PANTHER | 1 | 174 | 174 | 3.10E-111 | – | |
| SUPERFAMILY | 2 | 67 | 66 | 7.41E-15 | ||
| SMART | 4 | 59 | 56 | 2.90E-05 | ||
| Pfam | 5 | 55 | 51 | 2.90E-07 | ||
| Gene3D | 5 | 56 | 52 | 2.20E-12 | ||
| CDD | 6 | 57 | 52 | 2.17E-17 | – | |
| ProSiteProfiles | 115 | 187 | 73 | 21.862 | ||
| SMART | 123 | 182 | 60 | 2.30E-08 | ||
| SUPERFAMILY | 124 | 196 | 73 | 7.07E-15 | ||
| Gene3D | 126 | 190 | 65 | 6.40E-13 | ||
| Pfam | 127 | 180 | 54 | 3.50E-08 | ||
| Coils | 250 | 280 | 31 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of Lj4g3v0756940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0756940.1, powered by CORGI.
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