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Lj4g3v0987840.1

Overview

Field Value
Gene ID Lj4g3v0987840
Transcript ID Lj4g3v0987840.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: exosome complex component RRP43-like [Glycine max] gi|356526509|ref|XP_003531860.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11097
17 81 65 6.90E-93 –
PANTHER
PTHR11097:SF9
17 81 65 6.90E-93
IPR033196
Pfam
PF01138
17 114 98 1.10E-06
IPR001247
SUPERFAMILY
SSF54211
18 115 98 1.67E-17
IPR020568
SUPERFAMILY
SSF54211
116 199 84 1.28E-17
IPR020568
Pfam
PF01138
149 194 46 4.30E-05
IPR001247
PANTHER
PTHR11097:SF9
158 317 160 6.90E-93
IPR033196
PANTHER
PTHR11097
158 317 160 6.90E-93 –
SUPERFAMILY
SSF55666
227 310 84 4.38E-20
IPR015847
Pfam
PF03725
233 279 47 1.20E-05
IPR015847
SUPERFAMILY
SSF54211
241 255 15 1.28E-17
IPR020568

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000178
Cellular component Exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0006401
Biological process RNA catabolic process The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj4g3v0987840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0987840.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.