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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1107690 |
| Transcript ID | Lj4g3v1107690.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: syntaxin-22-like [Glycine max] gi|356496277|ref|XP_003516995.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 272 | 272 | 6.80E-189 | – | |
| MobiDBLite | 1 | 21 | 21 | – | – | |
| PANTHER | 1 | 272 | 272 | 6.80E-189 | – | |
| Phobius | 1 | 251 | 251 | – | – | |
| SMART | 14 | 127 | 114 | 7.60E-23 | ||
| SUPERFAMILY | 23 | 235 | 213 | 5.89E-40 | ||
| CDD | 23 | 148 | 126 | 1.70E-25 | – | |
| Gene3D | 27 | 236 | 210 | 8.10E-35 | – | |
| Pfam | 30 | 129 | 100 | 5.00E-29 | – | |
| SMART | 175 | 242 | 68 | 1.60E-18 | ||
| ProSiteProfiles | 180 | 242 | 63 | 18.061 | ||
| CDD | 183 | 241 | 59 | 1.20E-23 | – | |
| ProSitePatterns | 186 | 225 | 40 | – | ||
| Pfam | 217 | 268 | 52 | 4.80E-16 | ||
| TMHMM | 250 | 272 | 23 | – | – | |
| Phobius | 252 | 272 | 21 | – | – | |
| Phobius | 273 | 273 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of Lj4g3v1107690.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1107690.1, powered by CORGI.
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