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Field | Value |
---|---|
Gene ID | Lj4g3v1476180 |
Transcript ID | Lj4g3v1476180.1 |
Related isoforms 1 | |
Lotus japonicus genome version | MG20 v3.0 |
Description | PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10-like [Cicer arietinum] gi|502152331|ref|XP_004508876.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 41 | 41 | – | – | |
PANTHER | 30 | 274 | 245 | 9.30E-129 | ||
Pfam | 30 | 272 | 243 | 4.00E-84 | ||
Coils | 40 | 60 | 21 | – | – | |
MobiDBLite | 239 | 286 | 48 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Cellular component | Small nucleolar ribonucleoprotein complex | A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type. | ||
Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
Cellular component | Mpp10 complex | A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Mpp10p, Imp3p and Imp4p. |
Expression pattern of Lj4g3v1476180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1476180.1, powered by CORGI.
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