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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1477240 |
| Transcript ID | Lj4g3v1477240.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transducin beta-like protein 3-like [Glycine max] gi|356513431|ref|XP_003525417.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 840 | 840 | 0 | – | |
| PANTHER | 1 | 840 | 840 | 0 | – | |
| SUPERFAMILY | 21 | 376 | 356 | 2.75E-55 | ||
| Gene3D | 27 | 282 | 256 | 4.10E-54 | ||
| CDD | 28 | 256 | 229 | 7.19E-48 | – | |
| SMART | 49 | 88 | 40 | 2.20E-07 | ||
| Pfam | 55 | 88 | 34 | 5.90E-04 | ||
| ProSiteProfiles | 56 | 663 | 608 | 78.144 | ||
| ProSiteProfiles | 56 | 97 | 42 | 14.686 | ||
| SMART | 91 | 130 | 40 | 1.80E-10 | ||
| Pfam | 93 | 129 | 37 | 9.60E-07 | ||
| ProSiteProfiles | 98 | 139 | 42 | 12.179 | ||
| SMART | 133 | 178 | 46 | 3.00E-05 | ||
| Pfam | 135 | 178 | 44 | 0.0034 | ||
| SMART | 184 | 223 | 40 | 1.40E-08 | ||
| Pfam | 186 | 223 | 38 | 0.012 | ||
| ProSiteProfiles | 191 | 232 | 42 | 14.385 | ||
| ProSitePatterns | 210 | 224 | 15 | – | ||
| PRINTS | 210 | 224 | 15 | 7.80E-07 | ||
| SMART | 229 | 286 | 58 | 220 | ||
| Gene3D | 283 | 301 | 19 | 5.20E-75 | ||
| SUPERFAMILY | 346 | 653 | 308 | 3.11E-71 | ||
| Gene3D | 347 | 653 | 307 | 5.20E-75 | ||
| SMART | 348 | 388 | 41 | 25 | ||
| CDD | 357 | 653 | 297 | 1.55E-58 | – | |
| SMART | 391 | 433 | 43 | 2.60E-06 | ||
| Pfam | 393 | 433 | 41 | 3.40E-06 | ||
| ProSiteProfiles | 398 | 442 | 45 | 11.511 | ||
| ProSitePatterns | 420 | 434 | 15 | – | ||
| PRINTS | 420 | 434 | 15 | 7.80E-07 | ||
| SMART | 436 | 476 | 41 | 1.30E-05 | ||
| Pfam | 438 | 476 | 39 | 0.0039 | ||
| ProSiteProfiles | 443 | 485 | 43 | 11.043 | ||
| PRINTS | 463 | 477 | 15 | 7.80E-07 | ||
| SMART | 489 | 528 | 40 | 4.00E-06 | ||
| ProSiteProfiles | 496 | 529 | 34 | 11.645 | ||
| Pfam | 497 | 527 | 31 | 4.50E-04 | ||
| SMART | 531 | 570 | 40 | 4.00E-08 | ||
| Pfam | 537 | 569 | 33 | 2.10E-05 | ||
| ProSiteProfiles | 538 | 579 | 42 | 15.12 | ||
| SMART | 573 | 612 | 40 | 3.20E-07 | ||
| Pfam | 574 | 611 | 38 | 2.30E-04 | ||
| ProSiteProfiles | 580 | 621 | 42 | 13.015 | ||
| SMART | 615 | 654 | 40 | 5.20E-04 | ||
| ProSiteProfiles | 622 | 653 | 32 | 10.107 | ||
| Pfam | 676 | 809 | 134 | 6.90E-43 | ||
| Coils | 713 | 733 | 21 | – | – | |
| MobiDBLite | 834 | 879 | 46 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Cellular component | Small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
Expression pattern of Lj4g3v1477240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1477240.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.