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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1600410 |
| Transcript ID | Lj4g3v1600410.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RING finger and CHY zinc finger domain-containing protein [Medicago truncatula] gi|357504223|ref|XP_003622400.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 29 | 29 | – | – | |
| PANTHER | 25 | 837 | 813 | 0 | – | |
| PANTHER | 25 | 837 | 813 | 0 | – | |
| Phobius | 30 | 51 | 22 | – | – | |
| Gene3D | 40 | 207 | 168 | 2.10E-22 | – | |
| CDD | 47 | 158 | 112 | 1.00E-15 | – | |
| Phobius | 52 | 429 | 378 | – | – | |
| Gene3D | 286 | 460 | 175 | 3.90E-14 | – | |
| Coils | 293 | 313 | 21 | – | – | |
| Phobius | 430 | 452 | 23 | – | – | |
| Phobius | 453 | 1225 | 773 | – | – | |
| Gene3D | 501 | 513 | 13 | 3.90E-14 | – | |
| MobiDBLite | 534 | 553 | 20 | – | – | |
| Gene3D | 597 | 790 | 194 | 8.20E-21 | – | |
| CDD | 600 | 745 | 146 | 4.79E-19 | – | |
| PANTHER | 1005 | 1225 | 221 | 0 | – | |
| PANTHER | 1005 | 1225 | 221 | 0 | – | |
| SUPERFAMILY | 1006 | 1071 | 66 | 1.44E-14 | – | |
| ProSiteProfiles | 1008 | 1077 | 70 | 23.811 | ||
| Pfam | 1015 | 1090 | 76 | 2.10E-18 | ||
| ProSiteProfiles | 1080 | 1143 | 64 | 27.311 | ||
| SUPERFAMILY | 1081 | 1135 | 55 | 1.18E-14 | – | |
| SUPERFAMILY | 1132 | 1191 | 60 | 1.38E-08 | – | |
| Gene3D | 1141 | 1191 | 51 | 1.80E-10 | ||
| ProSiteProfiles | 1144 | 1186 | 43 | 11.412 | ||
| SMART | 1144 | 1185 | 42 | 1.50E-04 | ||
| CDD | 1144 | 1189 | 46 | 1.22E-05 | – | |
| Pfam | 1191 | 1225 | 35 | 2.60E-07 | – | |
| Coils | 1224 | 1225 | 2 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v1600410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1600410.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.