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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017921
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.348s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0162139.2
n.a. Zinc finger protein-related isoform 1 [Theobroma cacao] gi|508708206|gb|EOY00103.1| chr0 76414002 76423289 +
2 domain predictions
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Lj0g3v0162139.3
n.a. Zinc finger protein-related isoform 1 [Theobroma cacao] gi|508708206|gb|EOY00103.1| chr0 76414002 76424433 +
2 domain predictions
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Lj1g3v1932600.2
n.a. PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356515508|ref|XP_003526442.1| chr1 23085967 23089161 +
2 domain predictions
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Lj1g3v3354070.2
n.a. PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356555553|ref|XP_003546095.1| chr1 38460510 38463626 -
2 domain predictions
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Lj1g3v4917520.1
n.a. PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356505514|ref|XP_003521535.1| chr1 59630548 59634098 +
2 domain predictions
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Lj2g3v0719120.1
n.a. Zinc finger protein-like protein [Medicago truncatula] gi|357500299|ref|XP_003620438.1| chr2 11385534 11396139 +
2 domain predictions
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Lj3g3v3033270.1
n.a. PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356539356|ref|XP_003538164.1| chr3 37989462 37992179 +
2 domain predictions
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Lj4g3v1600410.1
n.a. RING finger and CHY zinc finger domain-containing protein [Medicago truncatula] gi|357504223|ref|XP_003622400.1| chr4 23570437 23581776 +
2 domain predictions
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Lj4g3v3099530.1
n.a. Zinc finger protein-like protein [Medicago truncatula] gi|357500299|ref|XP_003620438.1| chr4 41297066 41311617 -
2 domain predictions
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Lj4g3v3099540.1
n.a. Zinc finger protein-like protein [Medicago truncatula] gi|357500299|ref|XP_003620438.1| chr4 41297133 41311409 -
2 domain predictions
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Lj6g3v1918320.1
n.a. RING finger and CHY zinc finger domain-containing protein [Medicago truncatula] gi|357447417|ref|XP_003593984.1| chr6 21780326 21783921 -
2 domain predictions
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LotjaGi1g1v0390600.4
n.a. RING finger and CHY zinc finger protein; TAIR: AT5G25560.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp|Q8VZK0|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr|I1K915|I1K915_SOYBN C2H2-Zn transcription factor; Found in the gene: LotjaGi1g1v0390600 LjG1.1_chr1 87422562 87429315 +
2 domain predictions
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LotjaGi1g1v0561900.1
n.a. RING finger and CHY zinc finger protein; TAIR: AT5G18650.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp|Q8VZK0|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr|S5U437|S5U437_MAIZE Uncharacterized protein; Found in the gene: LotjaGi1g1v0561900 LjG1.1_chr1 109403414 109406938 -
2 domain predictions
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LotjaGi2g1v0205100.1
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIY9|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853703 64867879 +
2 domain predictions
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LotjaGi2g1v0205100.2
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIZ0|I1KIZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853966 64866151 +
2 domain predictions
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LotjaGi2g1v0205100.3
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIY9|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853966 64867209 +
2 domain predictions
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LotjaGi2g1v0205100.4
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIY9|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853966 64867209 +
2 domain predictions
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LotjaGi2g1v0205100.5
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIY9|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853984 64867209 +
2 domain predictions
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LotjaGi2g1v0274900.1
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1L2P4|I1L2P4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274900 LjG1.1_chr2 74667509 74676001 +
2 domain predictions
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LotjaGi3g1v0484900.1
n.a. RING finger and CHY zinc finger protein; TAIR: AT5G22920.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp|Q8VZK0|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr|I3SWI0|I3SWI0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0484900 LjG1.1_chr3 90209787 90213600 +
2 domain predictions
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LotjaGi4g1v0244600.1
n.a. Zinc finger protein, putative; TAIR: AT1G74770.1 zinc ion binding protein; Swiss-Prot: sp|F4HVS0|BTSL2_ARATH Zinc finger protein BRUTUS-like At1g74770; TrEMBL-Plants: tr|I1MTQ0|I1MTQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0244600 LjG1.1_chr4 59612873 59624894 +
2 domain predictions
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LotjaGi4g1v0244600.2
n.a. Zinc finger protein, putative; TAIR: AT1G74770.1 zinc ion binding protein; Swiss-Prot: sp|F4HVS0|BTSL2_ARATH Zinc finger protein BRUTUS-like At1g74770; TrEMBL-Plants: tr|I1MTQ0|I1MTQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0244600 LjG1.1_chr4 59612874 59626065 +
2 domain predictions
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LotjaGi4g1v0453800.1
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82572686 82582294 -
2 domain predictions
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LotjaGi4g1v0453800.10
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.11
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581901 -
2 domain predictions
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LotjaGi4g1v0453800.2
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82572686 82582294 -
2 domain predictions
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LotjaGi4g1v0453800.3
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573188 82582080 -
2 domain predictions
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LotjaGi4g1v0453800.4
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82580147 -
2 domain predictions
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LotjaGi4g1v0453800.5
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.6
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.7
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.8
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|K7L4Y8|K7L4Y8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.9
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
 –