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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1893220 |
| Transcript ID | Lj4g3v1893220.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Cl-channel clc-7 [Populus trichocarpa] gi|224120342|ref|XP_002331024.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 72 | 72 | – | – | |
| PANTHER | 8 | 379 | 372 | 0 | – | |
| PANTHER | 8 | 379 | 372 | 0 | – | |
| PRINTS | 49 | 57 | 9 | 1.30E-20 | ||
| SUPERFAMILY | 53 | 380 | 328 | 1.83E-94 | ||
| Gene3D | 61 | 380 | 320 | 9.40E-118 | ||
| Phobius | 73 | 96 | 24 | – | – | |
| TMHMM | 74 | 96 | 23 | – | – | |
| Phobius | 97 | 116 | 20 | – | – | |
| TMHMM | 117 | 139 | 23 | – | – | |
| Phobius | 117 | 146 | 30 | – | – | |
| Pfam | 132 | 546 | 415 | 3.50E-89 | ||
| PRINTS | 144 | 161 | 18 | 1.70E-60 | ||
| Phobius | 147 | 165 | 19 | – | – | |
| TMHMM | 165 | 187 | 23 | – | – | |
| Phobius | 166 | 187 | 22 | – | – | |
| PRINTS | 175 | 194 | 20 | 1.70E-60 | ||
| Phobius | 188 | 232 | 45 | – | – | |
| Phobius | 233 | 257 | 25 | – | – | |
| TMHMM | 234 | 256 | 23 | – | – | |
| PRINTS | 239 | 258 | 20 | 1.70E-60 | ||
| Phobius | 258 | 262 | 5 | – | – | |
| PRINTS | 260 | 268 | 9 | 1.30E-20 | ||
| TMHMM | 261 | 283 | 23 | – | – | |
| Phobius | 263 | 283 | 21 | – | – | |
| PRINTS | 274 | 284 | 11 | 1.30E-20 | ||
| Phobius | 284 | 294 | 11 | – | – | |
| PRINTS | 292 | 299 | 8 | 1.30E-20 | ||
| TMHMM | 295 | 317 | 23 | – | – | |
| Phobius | 295 | 315 | 21 | – | – | |
| Phobius | 316 | 320 | 5 | – | – | |
| Phobius | 321 | 340 | 20 | – | – | |
| TMHMM | 322 | 341 | 20 | – | – | |
| Phobius | 341 | 359 | 19 | – | – | |
| Phobius | 360 | 381 | 22 | – | – | |
| TMHMM | 360 | 382 | 23 | – | – | |
| Phobius | 382 | 445 | 64 | – | – | |
| PANTHER | 408 | 771 | 364 | 0 | – | |
| PANTHER | 408 | 771 | 364 | 0 | – | |
| PRINTS | 416 | 432 | 17 | 1.30E-20 | ||
| SUPERFAMILY | 421 | 567 | 147 | 1.83E-94 | ||
| Gene3D | 421 | 571 | 151 | 9.40E-118 | ||
| TMHMM | 446 | 480 | 35 | – | – | |
| Phobius | 446 | 475 | 30 | – | – | |
| PRINTS | 464 | 484 | 21 | 1.70E-60 | ||
| Phobius | 476 | 495 | 20 | – | – | |
| TMHMM | 493 | 515 | 23 | – | – | |
| PRINTS | 496 | 512 | 17 | 1.70E-60 | ||
| Phobius | 496 | 522 | 27 | – | – | |
| PRINTS | 514 | 533 | 20 | 1.70E-60 | ||
| TMHMM | 519 | 541 | 23 | – | – | |
| Phobius | 523 | 527 | 5 | – | – | |
| Phobius | 528 | 548 | 21 | – | – | |
| Phobius | 549 | 780 | 232 | – | – | |
| PRINTS | 552 | 566 | 15 | 1.70E-60 | ||
| SUPERFAMILY | 568 | 743 | 176 | 3.99E-23 | – | |
| ProSiteProfiles | 573 | 643 | 71 | 6.67 | ||
| Gene3D | 573 | 643 | 71 | 1.50E-11 | – | |
| SMART | 585 | 638 | 54 | 7.4 | ||
| CDD | 595 | 742 | 148 | 1.90E-15 | – | |
| Gene3D | 681 | 742 | 62 | 1.50E-11 | – | |
| ProSiteProfiles | 692 | 753 | 62 | 9.734 | ||
| SMART | 696 | 747 | 52 | 0.7 | ||
| Pfam | 696 | 742 | 47 | 0.0022 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Voltage-gated chloride channel activity | Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Chloride transport | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v1893220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1893220.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.