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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2120450 |
| Transcript ID | Lj4g3v2120450.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356533832|ref|XP_003535462.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 214 | 214 | 0 | ||
| PANTHER | 1 | 214 | 214 | 0 | – | |
| MobiDBLite | 1 | 68 | 68 | – | – | |
| PIRSF | 7 | 597 | 591 | 4.50E-268 | ||
| Coils | 19 | 55 | 37 | – | – | |
| SUPERFAMILY | 65 | 209 | 145 | 5.14E-35 | ||
| Gene3D | 68 | 209 | 142 | 1.60E-42 | – | |
| Hamap | 73 | 596 | 524 | 37.655 | ||
| CDD | 119 | 255 | 137 | 1.83E-44 | – | |
| Pfam | 120 | 197 | 78 | 2.30E-12 | ||
| TIGRFAM | 235 | 596 | 362 | 1.40E-154 | ||
| PANTHER | 236 | 597 | 362 | 0 | – | |
| PANTHER | 236 | 597 | 362 | 0 | ||
| Gene3D | 241 | 592 | 352 | 9.00E-121 | – | |
| Pfam | 243 | 593 | 351 | 6.10E-84 | ||
| SUPERFAMILY | 243 | 594 | 352 | 4.59E-119 | – | |
| CDD | 258 | 595 | 338 | 0 | ||
| ProSiteProfiles | 270 | 595 | 326 | 25.884 | ||
| PRINTS | 280 | 290 | 11 | 2.60E-37 | ||
| PRINTS | 296 | 312 | 17 | 2.60E-37 | ||
| PRINTS | 325 | 338 | 14 | 2.60E-37 | ||
| PRINTS | 343 | 360 | 18 | 2.60E-37 | ||
| PRINTS | 478 | 494 | 17 | 2.60E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Lysine-tRNA ligase activity | Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Lysyl-tRNA aminoacylation | The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA. |
Expression pattern of Lj4g3v2120450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2120450.1, powered by CORGI.
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