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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2137100 |
| Transcript ID | Lj4g3v2137100.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pathogenesis-related homeodomain protein-like [Glycine max] gi|356550724|ref|XP_003543734.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 130 | 130 | – | – | |
| PANTHER | 61 | 687 | 627 | 2.50E-191 | – | |
| PANTHER | 61 | 687 | 627 | 2.50E-191 | – | |
| Gene3D | 210 | 273 | 64 | 4.70E-12 | ||
| SUPERFAMILY | 212 | 274 | 63 | 5.35E-14 | ||
| ProSiteProfiles | 215 | 272 | 58 | 10.158 | ||
| CDD | 217 | 269 | 53 | 1.40E-27 | – | |
| SMART | 217 | 270 | 54 | 4.10E-09 | ||
| ProSitePatterns | 218 | 269 | 52 | – | ||
| Pfam | 218 | 271 | 54 | 3.20E-10 | ||
| MobiDBLite | 304 | 396 | 93 | – | – | |
| MobiDBLite | 440 | 464 | 25 | – | – | |
| Gene3D | 454 | 515 | 62 | 1.10E-11 | ||
| SUPERFAMILY | 460 | 524 | 65 | 2.22E-10 | ||
| ProSiteProfiles | 461 | 521 | 61 | 12.212 | ||
| SMART | 463 | 525 | 63 | 1.60E-08 | ||
| CDD | 464 | 516 | 53 | 3.39E-08 | – | |
| Pfam | 469 | 516 | 48 | 3.20E-08 | ||
| MobiDBLite | 544 | 604 | 61 | – | – | |
| Coils | 632 | 659 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of Lj4g3v2137100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2137100.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.