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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2575040 |
| Transcript ID | Lj4g3v2575040.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like [Glycine max] gi|356528278|ref|XP_003532731.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 219 | 219 | 2.10E-217 | – | |
| PANTHER | 1 | 219 | 219 | 2.10E-217 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 8.616 | ||
| TIGRFAM | 11 | 44 | 34 | 9.40E-04 | ||
| Pfam | 11 | 41 | 31 | 0.22 | ||
| Pfam | 44 | 92 | 49 | 4.20E-10 | ||
| ProSiteProfiles | 44 | 78 | 35 | 9.58 | ||
| TIGRFAM | 47 | 80 | 34 | 3.60E-04 | ||
| ProSiteProfiles | 79 | 113 | 35 | 11.203 | ||
| TIGRFAM | 81 | 113 | 33 | 1.20E-06 | ||
| Pfam | 113 | 157 | 45 | 4.00E-10 | ||
| ProSiteProfiles | 114 | 148 | 35 | 11.575 | ||
| TIGRFAM | 116 | 149 | 34 | 1.30E-05 | ||
| SUPERFAMILY | 116 | 248 | 133 | 6.07E-07 | ||
| ProSiteProfiles | 149 | 183 | 35 | 8.517 | ||
| TIGRFAM | 151 | 184 | 34 | 5.90E-04 | ||
| Gene3D | 158 | 234 | 77 | 1.40E-20 | ||
| ProSiteProfiles | 184 | 218 | 35 | 9.536 | ||
| Pfam | 186 | 215 | 30 | 8.00E-04 | ||
| ProSiteProfiles | 219 | 253 | 35 | 7.169 | ||
| Pfam | 226 | 249 | 24 | 0.63 | ||
| Gene3D | 235 | 351 | 117 | 3.00E-04 | ||
| ProSiteProfiles | 288 | 322 | 35 | 6.73 | ||
| ProSiteProfiles | 323 | 357 | 35 | 8.846 | ||
| Pfam | 327 | 353 | 27 | 0.043 | ||
| ProSiteProfiles | 460 | 490 | 31 | 6.489 | ||
| Gene3D | 463 | 563 | 101 | 1.40E-20 | ||
| SUPERFAMILY | 471 | 563 | 93 | 3.75E-10 | ||
| ProSiteProfiles | 494 | 528 | 35 | 10.358 | ||
| PANTHER | 495 | 514 | 20 | 2.10E-217 | – | |
| PANTHER | 495 | 514 | 20 | 2.10E-217 | – | |
| TIGRFAM | 498 | 525 | 28 | 4.20E-04 | ||
| Pfam | 498 | 525 | 28 | 1.00E-04 | ||
| ProSiteProfiles | 529 | 563 | 35 | 6.182 | ||
| Pfam | 562 | 612 | 51 | 9.00E-08 | ||
| PANTHER | 563 | 683 | 121 | 2.10E-217 | – | |
| PANTHER | 563 | 683 | 121 | 2.10E-217 | – | |
| ProSiteProfiles | 564 | 598 | 35 | 9.745 | ||
| TIGRFAM | 566 | 596 | 31 | 5.50E-04 | ||
| ProSiteProfiles | 599 | 633 | 35 | 9.723 | ||
| SUPERFAMILY | 600 | 660 | 61 | 3.75E-10 | ||
| Gene3D | 600 | 663 | 64 | 1.40E-20 | ||
| TIGRFAM | 602 | 634 | 33 | 1.10E-05 | ||
| ProSiteProfiles | 634 | 668 | 35 | 11.729 | ||
| Pfam | 636 | 681 | 46 | 2.50E-11 | ||
| TIGRFAM | 638 | 668 | 31 | 1.10E-05 | ||
| ProSiteProfiles | 669 | 683 | 15 | 5.075 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2575040.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2575040.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.