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Lj4g3v2628800.1

Overview

Field Value
Gene ID Lj4g3v2628800
Transcript ID Lj4g3v2628800.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: HBS1-like protein-like [Glycine max] gi|356528366|ref|XP_003532775.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50199
44 73 30 8.468
IPR001876
SMART
SM00547
46 70 25 1.80E-04
IPR001876
SUPERFAMILY
SSF90209
46 71 26 6.67E-06
IPR001876
ProSitePatterns
PS01358
48 67 20 –
IPR001876
MobiDBLite
mobidb-lite
155 174 20 – –
MobiDBLite
mobidb-lite
221 245 25 – –
PANTHER
PTHR23115:SF134
242 669 428 7.50E-220 –
PANTHER
PTHR23115
242 669 428 7.50E-220 –
ProSiteProfiles
PS51722
258 489 232 51.647
IPR000795
Gene3D
G3DSA:3.40.50.300
259 482 224 7.80E-65
IPR027417
SUPERFAMILY
SSF52540
260 503 244 1.54E-58
IPR027417
Pfam
PF00009
261 477 217 3.30E-44 –
PRINTS
PR00315
262 275 14 1.40E-19
IPR000795
CDD
cd01883
262 481 220 2.11E-118 –
PRINTS
PR00315
321 329 9 1.40E-19
IPR000795
PRINTS
PR00315
341 351 11 1.40E-19
IPR000795
PRINTS
PR00315
357 368 12 1.40E-19
IPR000795
PRINTS
PR00315
402 411 10 1.40E-19
IPR000795
Gene3D
G3DSA:2.40.30.10
486 593 108 3.10E-23 –
SUPERFAMILY
SSF50447
486 610 125 4.71E-19
IPR009000
CDD
cd03698
488 572 85 2.98E-27 –
CDD
cd04093
576 669 94 4.65E-34 –
Pfam
PF03143
577 668 92 1.90E-08
IPR004160
SUPERFAMILY
SSF50465
581 668 88 6.48E-17
IPR009001
Gene3D
G3DSA:2.40.30.10
594 668 75 1.40E-19 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj4g3v2628800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2628800.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.