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Lj4g3v2846270.1

Overview

Field Value
Gene ID Lj4g3v2846270
Transcript ID Lj4g3v2846270.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 87 87 – –
PANTHER
PTHR24031:SF301
5 572 568 0 –
PANTHER
PTHR24031
5 572 568 0 –
Coils
Coil
13 33 21 – –
Gene3D
G3DSA:3.40.50.300
79 307 229 1.50E-70
IPR027417
ProSiteProfiles
PS51195
90 118 29 10.033
IPR014014
CDD
cd00268
92 297 206 1.57E-84 –
SMART
SM00487
109 314 206 2.30E-55
IPR014001
Pfam
PF00270
114 285 172 6.10E-45
IPR011545
ProSiteProfiles
PS51192
121 296 176 30.541
IPR014001
SUPERFAMILY
SSF52540
162 453 292 2.33E-61
IPR027417
ProSitePatterns
PS00039
242 250 9 –
IPR000629
Gene3D
G3DSA:3.40.50.300
308 459 152 6.10E-41
IPR027417
CDD
cd00079
311 440 130 2.14E-31 –
ProSiteProfiles
PS51194
323 480 158 19.671
IPR001650
Pfam
PF00271
324 430 107 5.00E-24
IPR001650
SMART
SM00490
350 431 82 6.40E-25
IPR001650
SMART
SM01178
471 534 64 4.30E-28
IPR025313
Pfam
PF13959
472 532 61 5.30E-19
IPR025313
MobiDBLite
mobidb-lite
539 569 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj4g3v2846270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2846270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.