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| Field | Value |
|---|---|
| Gene ID | Lj4g3v3113090 |
| Transcript ID | Lj4g3v3113090.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein VAC14 homolog [Glycine max] gi|356524533|ref|XP_003530883.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 677 | 677 | 0 | – | |
| PANTHER | 1 | 677 | 677 | 0 | ||
| SUPERFAMILY | 3 | 557 | 555 | 6.72E-65 | ||
| Gene3D | 10 | 451 | 442 | 1.70E-42 | ||
| Pfam | 65 | 161 | 97 | 3.10E-41 | ||
| ProSiteProfiles | 92 | 127 | 36 | 10.321 | ||
| Pfam | 429 | 608 | 180 | 2.10E-71 | ||
| MobiDBLite | 630 | 650 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphatidylinositol biosynthetic process | The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. | ||
| Cellular component | PAS complex | A class III phosphatidylinositol 3-kinase complex that contains a phosphatidylinositol-3-phosphate 5-kinase subunit (Fab1p in yeast; PIKfyve in mammals), a kinase activator, and a phosphatase, and may also contain additional proteins; it is involved in regulating the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate. In mammals the complex is composed of PIKFYVE, FIG4 and VAC14. In yeast it is composed of Atg18p, Fig4p, Fab1p, Vac14p and Vac7p. |
Expression pattern of Lj4g3v3113090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v3113090.1, powered by CORGI.
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