Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v0144410.1

Overview

Field Value
Gene ID Lj5g3v0144410
Transcript ID Lj5g3v0144410.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: GTPase obg-like [Glycine max] gi|356564323|ref|XP_003550404.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11702
20 61 42 2.40E-132 –
PANTHER
PTHR11702:SF3
20 61 42 2.40E-132
IPR014100
Gene3D
G3DSA:2.70.210.12
44 186 143 6.00E-21
IPR006169
SUPERFAMILY
SSF82051
45 203 159 1.15E-18
IPR006169
Pfam
PF01018
47 185 139 5.60E-18
IPR006169
PANTHER
PTHR11702:SF3
79 358 280 2.40E-132
IPR014100
PANTHER
PTHR11702
79 358 280 2.40E-132 –
Gene3D
G3DSA:3.40.50.300
206 339 134 1.10E-47
IPR027417
ProSiteProfiles
PS51710
206 417 212 61.303
IPR031167
CDD
cd01898
206 347 142 2.40E-55 –
Pfam
PF01926
207 334 128 2.10E-24
IPR006073
SUPERFAMILY
SSF52540
207 355 149 3.93E-42
IPR027417
PRINTS
PR00326
208 228 21 1.40E-33
IPR006073
PRINTS
PR00326
229 247 19 1.40E-33
IPR006073
PRINTS
PR00326
264 279 16 1.40E-33
IPR006073
ProSitePatterns
PS00905
266 279 14 –
IPR006074
PRINTS
PR00326
281 299 19 1.40E-33
IPR006073
PANTHER
PTHR11702:SF3
388 418 31 2.40E-132
IPR014100
PANTHER
PTHR11702
388 418 31 2.40E-132 –
Gene3D
G3DSA:3.40.50.300
391 420 30 1.10E-47
IPR027417
SUPERFAMILY
SSF52540
391 416 26 3.93E-42
IPR027417
Coils
Coil
405 425 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj5g3v0144410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0144410.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.