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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1073940 |
| Transcript ID | Lj5g3v1073940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U-box domain-containing protein 3-like isoform X1 [Cicer arietinum] gi|502114958|ref|XP_004495091.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 325 | 325 | 0 | – | |
| PANTHER | 1 | 325 | 325 | 0 | – | |
| Gene3D | 47 | 80 | 34 | 2.00E-68 | ||
| Gene3D | 170 | 216 | 47 | 2.00E-68 | ||
| Coils | 196 | 216 | 21 | – | – | |
| SUPERFAMILY | 239 | 315 | 77 | 4.79E-27 | – | |
| Gene3D | 240 | 312 | 73 | 7.70E-31 | ||
| ProSiteProfiles | 240 | 314 | 75 | 40.161 | ||
| Pfam | 241 | 312 | 72 | 2.20E-24 | ||
| SMART | 244 | 307 | 64 | 2.20E-27 | ||
| PANTHER | 383 | 788 | 406 | 0 | – | |
| PANTHER | 383 | 788 | 406 | 0 | – | |
| MobiDBLite | 463 | 485 | 23 | – | – | |
| CDD | 496 | 613 | 118 | 9.01E-12 | – | |
| SUPERFAMILY | 498 | 776 | 279 | 3.52E-48 | ||
| Gene3D | 504 | 776 | 273 | 2.00E-68 | ||
| SMART | 533 | 573 | 41 | 0.015 | ||
| Pfam | 535 | 572 | 38 | 3.50E-06 | ||
| ProSiteProfiles | 544 | 586 | 43 | 11.637 | ||
| SMART | 574 | 614 | 41 | 0.087 | ||
| Pfam | 575 | 613 | 39 | 6.40E-06 | ||
| CDD | 579 | 695 | 117 | 1.38E-14 | – | |
| ProSiteProfiles | 585 | 627 | 43 | 9.082 | ||
| SMART | 615 | 655 | 41 | 0.46 | ||
| Pfam | 618 | 654 | 37 | 8.00E-06 | ||
| ProSiteProfiles | 626 | 668 | 43 | 10.657 | ||
| SMART | 656 | 695 | 40 | 8.40E-04 | ||
| CDD | 663 | 776 | 114 | 1.67E-08 | – | |
| ProSiteProfiles | 667 | 708 | 42 | 12.337 | ||
| SMART | 696 | 736 | 41 | 15 | ||
| MobiDBLite | 765 | 789 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of Lj5g3v1073940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1073940.1, powered by CORGI.
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