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Lj5g3v1263990.1

Overview

Field Value
Gene ID Lj5g3v1263990
Transcript ID Lj5g3v1263990.1
Lotus japonicus genome version MG20 v3.0
Description C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao] gi|508727165|gb|EOY19062.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF57667
45 96 52 4.76E-15 –
SMART
SM00451
45 78 34 0.007
IPR003604
Pfam
PF06220
45 70 26 1.80E-14
IPR013085
Hamap
MF_03153
45 193 149 10.622
IPR017340
PANTHER
PTHR31148:SF1
46 226 181 1.50E-43 –
PANTHER
PTHR31148
46 226 181 1.50E-43
IPR017340
ProSiteProfiles
PS50171
48 68 21 9.271
IPR000690
MobiDBLite
mobidb-lite
147 229 83 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000387
Biological process Spliceosomal snRNP assembly The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
Subterm of
Part of
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0005685
Cellular component U1 snRNP A ribonucleoprotein complex that contains small nuclear RNA U1.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v1263990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1263990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.