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PF06220

Source: Pfam

Description

U1 zinc finger

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Associated Lotus transcripts 8

Transcript Name Description Predicted domains Domain count
Lj4g3v0575060.1
– WW domain-binding protein [Medicago truncatula] gi|357475471|ref|XP_003608021.1|
Domains
9
Lj5g3v1263990.1
– C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao] gi|508727165|gb|EOY19062.1|
Domains
12
Lj5g3v1531170.1
– PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1 [Cicer arietinum] gi|502116891|ref|XP_004495629.1|
Domains
10
Lj5g3v1671380.1
– PREDICTED: U1 small nuclear ribonucleoprotein C-like isoform X1 [Cicer arietinum] gi|502117894|ref|XP_004495998.1|
Domains
13
LotjaGi1g1v0744200_LC.1
– U1 small nuclear ribonucleoprotein C; TAIR: AT4G03120.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C; TrEMBL-Plants: tr|A0A072U5H3|A0A072U5H3_MEDTR U1 small nuclear ribonucleoprotein C; Found in the gene: LotjaGi1g1v0744200_LC
Domains
17
LotjaGi4g1v0071400.1
– U1 small nuclear ribonucleoprotein C; TAIR: AT1G49590.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q7XA66|ZOP1_ARATH Zinc finger protein ZOP1; TrEMBL-Plants: tr|I3S6A8|I3S6A8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0071400
Domains
15
LotjaGi5g1v0232900.1
– U1 small nuclear ribonucleoprotein C; TAIR: AT5G26749.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q0JP11|C3H3_ORYSJ Zinc finger CCCH domain-containing protein 3; TrEMBL-Plants: tr|I1LB10|I1LB10_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0232900
Domains
13
LotjaGi5g1v0261800.1
– U1 small nuclear ribonucleoprotein C; TAIR: AT4G03120.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C; TrEMBL-Plants: tr|I3S8F7|I3S8F7_LOTJA U1 small nuclear ribonucleoprotein C; Found in the gene: LotjaGi5g1v0261800
Domains
15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 12.50