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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1600740 |
| Transcript ID | Lj5g3v1600740.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | BRCT domain-containing protein [Medicago truncatula] gi|357442293|ref|XP_003591424.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 6 | 96 | 91 | 8.972 | ||
| SUPERFAMILY | 6 | 92 | 87 | 5.38E-12 | ||
| Gene3D | 6 | 91 | 86 | 2.60E-09 | ||
| PANTHER | 6 | 1153 | 1148 | 0 | – | |
| PANTHER | 6 | 1153 | 1148 | 0 | – | |
| SMART | 8 | 86 | 79 | 3.50E-05 | ||
| CDD | 13 | 82 | 70 | 0.00649185 | ||
| SMART | 99 | 183 | 85 | 4.10E-08 | ||
| SUPERFAMILY | 110 | 192 | 83 | 1.06E-16 | ||
| Gene3D | 110 | 199 | 90 | 2.00E-14 | ||
| CDD | 111 | 178 | 68 | 2.46E-07 | ||
| Pfam | 111 | 175 | 65 | 5.70E-22 | ||
| ProSiteProfiles | 111 | 193 | 83 | 13.701 | ||
| MobiDBLite | 203 | 231 | 29 | – | – | |
| MobiDBLite | 246 | 291 | 46 | – | – | |
| MobiDBLite | 338 | 470 | 133 | – | – | |
| MobiDBLite | 498 | 541 | 44 | – | – | |
| MobiDBLite | 557 | 615 | 59 | – | – | |
| MobiDBLite | 649 | 817 | 169 | – | – | |
| ProSiteProfiles | 899 | 991 | 93 | 10.307 | ||
| SMART | 901 | 981 | 81 | 0.054 | ||
| SUPERFAMILY | 908 | 994 | 87 | 1.60E-15 | ||
| CDD | 909 | 977 | 69 | 1.10E-05 | ||
| Gene3D | 909 | 1012 | 104 | 1.10E-23 | ||
| Pfam | 915 | 976 | 62 | 9.00E-07 | ||
| SMART | 1019 | 1106 | 88 | 0.26 | ||
| Gene3D | 1136 | 1215 | 80 | 4.90E-14 | ||
| SUPERFAMILY | 1139 | 1208 | 70 | 3.54E-13 | ||
| ProSiteProfiles | 1149 | 1205 | 57 | 8.894 | ||
| SMART | 1151 | 1203 | 53 | 1.70E-05 | ||
| Pfam | 1152 | 1204 | 53 | 5.50E-08 | ||
| MobiDBLite | 1205 | 1226 | 22 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj5g3v1600740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1600740.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.