Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1796810.1

Overview

Field Value
Gene ID Lj5g3v1796810
Transcript ID Lj5g3v1796810.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356533949|ref|XP_003535520.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315:SF111
14 548 535 0 –
PANTHER
PTHR23315
14 548 535 0 –
Gene3D
G3DSA:1.25.10.10
42 126 85 2.30E-54
IPR011989
Coils
Coil
49 69 21 – –
SUPERFAMILY
SSF57850
165 245 81 1.06E-29 –
ProSiteProfiles
PS51698
169 243 75 40.719
IPR003613
Pfam
PF04564
170 240 71 5.90E-20
IPR003613
Gene3D
G3DSA:3.30.40.10
170 242 73 3.40E-33
IPR013083
SMART
SM00504
173 236 64 1.90E-32
IPR003613
CDD
cd00162
176 212 37 0.00101689 –
SUPERFAMILY
SSF48371
263 541 279 2.73E-48
IPR016024
CDD
cd00020
267 377 111 2.50E-16 –
Gene3D
G3DSA:1.25.10.10
268 538 271 2.30E-54
IPR011989
Pfam
PF00514
297 336 40 1.80E-10
IPR000225
SMART
SM00185
297 337 41 2.50E-06
IPR000225
ProSiteProfiles
PS50176
308 350 43 13.527
IPR000225
SMART
SM00185
338 378 41 0.038
IPR000225
ProSiteProfiles
PS50176
349 391 43 9.327
IPR000225
SMART
SM00185
379 419 41 0.01
IPR000225
Pfam
PF00514
380 418 39 2.30E-06
IPR000225
SMART
SM00185
420 460 41 170
IPR000225
CDD
cd00020
428 541 114 1.34E-07 –
SMART
SM00185
461 501 41 20
IPR000225
Coils
Coil
505 525 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v1796810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1796810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.