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Lj5g3v1796810.2

Overview

Field Value
Gene ID Lj5g3v1796810
Transcript ID Lj5g3v1796810.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356576248|ref|XP_003556245.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
5 625 621 0 –
PANTHER
PTHR23315:SF111
5 625 621 0 –
Gene3D
G3DSA:1.25.10.10
119 203 85 2.60E-54
IPR011989
Coils
Coil
126 146 21 – –
SUPERFAMILY
SSF57850
242 322 81 1.30E-29 –
ProSiteProfiles
PS51698
246 320 75 40.719
IPR003613
Gene3D
G3DSA:3.30.40.10
247 319 73 4.10E-33
IPR013083
Pfam
PF04564
247 317 71 7.10E-20
IPR003613
SMART
SM00504
250 313 64 1.90E-32
IPR003613
CDD
cd00162
253 289 37 7.55E-04 –
SUPERFAMILY
SSF48371
340 618 279 3.76E-48
IPR016024
CDD
cd00020
344 454 111 1.80E-16 –
Gene3D
G3DSA:1.25.10.10
345 615 271 2.60E-54
IPR011989
SMART
SM00185
374 414 41 2.50E-06
IPR000225
Pfam
PF00514
374 413 40 2.10E-10
IPR000225
ProSiteProfiles
PS50176
385 427 43 13.527
IPR000225
SMART
SM00185
415 455 41 0.038
IPR000225
ProSiteProfiles
PS50176
426 468 43 9.327
IPR000225
SMART
SM00185
456 496 41 0.01
IPR000225
Pfam
PF00514
457 495 39 2.70E-06
IPR000225
SMART
SM00185
497 537 41 170
IPR000225
CDD
cd00020
505 618 114 1.00E-07 –
SMART
SM00185
538 578 41 20
IPR000225
Coils
Coil
582 602 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v1796810.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1796810.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.