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Lj5g3v1988710.1

Overview

Field Value
Gene ID Lj5g3v1988710
Transcript ID Lj5g3v1988710.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable receptor-like protein kinase At5g24010-like [Glycine max] gi|356575998|ref|XP_003556122.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR27003
1 448 448 2.40E-286 –
Phobius
CYTOPLASMIC_DOMAIN
1 30 30 – –
PANTHER
PTHR27003:SF21
1 448 448 2.40E-286 –
Gene3D
G3DSA:2.60.120.200
16 123 108 1.60E-13
IPR013320
TMHMM
TMhelix
31 53 23 – –
Phobius
TRANSMEMBRANE
31 54 24 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
55 449 395 – –
SUPERFAMILY
SSF56112
95 380 286 5.93E-78
IPR011009
ProSiteProfiles
PS50011
110 386 277 36.301
IPR000719
SMART
SM00220
110 385 276 4.60E-30
IPR000719
Pfam
PF07714
115 311 197 2.90E-47
IPR001245
ProSitePatterns
PS00107
116 138 23 –
IPR017441
CDD
cd14066
116 382 267 5.02E-95 –
Gene3D
G3DSA:3.30.200.20
124 174 51 4.40E-26 –
Gene3D
G3DSA:1.10.510.10
175 378 204 3.60E-42 –
ProSitePatterns
PS00108
231 243 13 –
IPR008271
MobiDBLite
mobidb-lite
389 436 48 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj5g3v1988710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1988710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.