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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2099540 |
| Transcript ID | Lj5g3v2099540.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: vacuolar-sorting receptor 1-like isoform 1 [Glycine max] gi|356536097|ref|XP_003536576.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| SignalP | 1 | 27 | 27 | – | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| Phobius | 8 | 19 | 12 | – | – | |
| PANTHER | 11 | 161 | 151 | 0 | – | |
| PANTHER | 11 | 161 | 151 | 0 | – | |
| Phobius | 20 | 27 | 8 | – | – | |
| Phobius | 28 | 573 | 546 | – | – | |
| SUPERFAMILY | 35 | 174 | 140 | 3.01E-09 | – | |
| CDD | 54 | 181 | 128 | 5.81E-73 | – | |
| Pfam | 65 | 167 | 103 | 6.70E-13 | ||
| Gene3D | 66 | 181 | 116 | 6.70E-16 | – | |
| PANTHER | 202 | 245 | 44 | 0 | – | |
| PANTHER | 202 | 245 | 44 | 0 | – | |
| PANTHER | 291 | 320 | 30 | 0 | – | |
| PANTHER | 291 | 320 | 30 | 0 | – | |
| Gene3D | 313 | 400 | 88 | 6.20E-04 | ||
| PANTHER | 363 | 453 | 91 | 0 | – | |
| PANTHER | 363 | 453 | 91 | 0 | – | |
| Gene3D | 476 | 523 | 48 | 2.10E-05 | – | |
| PANTHER | 498 | 632 | 135 | 0 | – | |
| PANTHER | 498 | 632 | 135 | 0 | – | |
| Pfam | 503 | 523 | 21 | 3.00E-07 | ||
| CDD | 520 | 548 | 29 | 0.00221451 | – | |
| SMART | 520 | 562 | 43 | 0.0064 | ||
| ProSitePatterns | 520 | 546 | 27 | – | ||
| Gene3D | 524 | 562 | 39 | 1.00E-05 | – | |
| TMHMM | 573 | 595 | 23 | – | – | |
| Phobius | 574 | 595 | 22 | – | – | |
| Phobius | 596 | 632 | 37 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of Lj5g3v2099540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2099540.1, powered by CORGI.
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