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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2169560 |
| Transcript ID | Lj5g3v2169560.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cicer arietinum] gi|502120600|ref|XP_004497017.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 781 | 781 | – | – | |
| PANTHER | 48 | 488 | 441 | 0 | – | |
| PANTHER | 48 | 488 | 441 | 0 | – | |
| SMART | 283 | 472 | 190 | 3.50E-30 | ||
| Gene3D | 286 | 447 | 162 | 5.20E-46 | ||
| Pfam | 292 | 446 | 155 | 7.70E-10 | ||
| SUPERFAMILY | 293 | 477 | 185 | 3.14E-80 | ||
| ProSiteProfiles | 296 | 463 | 168 | 22.531 | ||
| CDD | 303 | 445 | 143 | 4.29E-24 | – | |
| PANTHER | 540 | 1110 | 571 | 0 | – | |
| PANTHER | 540 | 1110 | 571 | 0 | – | |
| SUPERFAMILY | 542 | 844 | 303 | 3.14E-80 | ||
| ProSiteProfiles | 550 | 724 | 175 | 16.629 | ||
| Pfam | 552 | 683 | 132 | 1.10E-15 | ||
| Gene3D | 553 | 693 | 141 | 3.00E-12 | ||
| CDD | 560 | 691 | 132 | 4.08E-11 | – | |
| SMART | 578 | 684 | 107 | 4.50E-15 | ||
| SMART | 746 | 836 | 91 | 2.90E-33 | ||
| Pfam | 747 | 835 | 89 | 2.00E-20 | ||
| Phobius | 782 | 804 | 23 | – | – | |
| Phobius | 805 | 1154 | 350 | – | – | |
| Pfam | 879 | 983 | 105 | 6.80E-15 | ||
| SUPERFAMILY | 1085 | 1151 | 67 | 6.45E-10 | – | |
| Gene3D | 1089 | 1150 | 62 | 1.20E-09 | ||
| Pfam | 1091 | 1150 | 60 | 1.70E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj5g3v2169560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2169560.1, powered by CORGI.
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