Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v2241240.1

Overview

Field Value
Gene ID Lj5g3v2241240
Transcript ID Lj5g3v2241240.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] gi|356525813|ref|XP_003531516.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 16 16 – –
Phobius
SIGNAL_PEPTIDE
1 33 33 – –
SignalP
SignalP-noTM_EUK
1 29 29 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
17 25 9 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
26 33 8 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
34 953 920 – –
Gene3D
G3DSA:3.40.50.300
136 319 184 2.30E-39
IPR027417
SUPERFAMILY
SSF52540
138 335 198 6.37E-36
IPR027417
SMART
SM00487
141 355 215 5.50E-20
IPR014001
Pfam
PF00270
147 322 176 6.10E-23
IPR011545
ProSiteProfiles
PS51192
154 339 186 18.959
IPR014001
CDD
cd00046
161 305 145 1.19E-17 –
SUPERFAMILY
SSF52540
342 554 213 1.83E-40
IPR027417
ProSiteProfiles
PS51194
365 567 203 11.953
IPR001650
Gene3D
G3DSA:3.40.50.300
373 565 193 1.20E-24
IPR027417
CDD
cd00079
385 525 141 1.06E-11 –
SMART
SM00490
438 526 89 3.00E-17
IPR001650
Pfam
PF00271
439 525 87 2.90E-08
IPR001650
SUPERFAMILY
SSF46785
554 659 106 1.96E-08
IPR011991
SMART
SM00973
647 950 304 1.60E-110
IPR004179
Pfam
PF02889
648 948 301 2.20E-86
IPR004179
SUPERFAMILY
SSF158702
675 846 172 1.02E-41 –
Gene3D
G3DSA:1.10.3380.10
678 787 110 1.10E-33 –
SUPERFAMILY
SSF81296
841 951 111 1.16E-26
IPR014756

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj5g3v2241240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2241240.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.