Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v2246110.1

Overview

Field Value
Gene ID Lj5g3v2246110
Transcript ID Lj5g3v2246110.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transportin-1-like isoform 1 [Glycine max] gi|356536398|ref|XP_003536725.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10527
3 326 324 0 –
PANTHER
PTHR10527:SF3
3 326 324 0 –
SUPERFAMILY
SSF48371
6 882 877 2.15E-165
IPR016024
SMART
SM00913
35 103 69 4.70E-07
IPR001494
ProSiteProfiles
PS50166
35 103 69 9.487
IPR001494
Pfam
PF03810
36 102 67 3.50E-13
IPR001494
Gene3D
G3DSA:1.25.10.10
128 321 194 2.60E-65
IPR011989
Gene3D
G3DSA:1.25.10.10
324 878 555 9.70E-147
IPR011989
PANTHER
PTHR10527:SF3
354 889 536 0 –
PANTHER
PTHR10527
354 889 536 0 –
Pfam
PF13513
405 458 54 7.30E-09 –
Pfam
PF02985
665 693 29 0.0026
IPR000357

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0008536
Molecular function Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v2246110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2246110.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.