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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2302910 |
| Transcript ID | Lj5g3v2302910.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: signal peptide peptidase-like 5-like isoform X1 [Cicer arietinum] gi|502121709|ref|XP_004497418.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| SignalP | 1 | 21 | 21 | – | – | |
| SignalP | 1 | 21 | 21 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 8 | 18 | 11 | – | – | |
| PANTHER | 11 | 511 | 501 | 0 | ||
| PANTHER | 11 | 511 | 501 | 0 | – | |
| Phobius | 19 | 22 | 4 | – | – | |
| Phobius | 23 | 176 | 154 | – | – | |
| SUPERFAMILY | 47 | 141 | 95 | 6.93E-07 | – | |
| Gene3D | 48 | 165 | 118 | 9.10E-20 | – | |
| Pfam | 77 | 152 | 76 | 8.00E-12 | ||
| TMHMM | 174 | 196 | 23 | – | – | |
| Phobius | 177 | 196 | 20 | – | – | |
| Phobius | 197 | 233 | 37 | – | – | |
| Pfam | 224 | 503 | 280 | 1.80E-81 | ||
| SMART | 225 | 492 | 268 | 2.60E-85 | ||
| TMHMM | 234 | 251 | 18 | – | – | |
| Phobius | 234 | 251 | 18 | – | – | |
| Phobius | 252 | 256 | 5 | – | – | |
| TMHMM | 255 | 277 | 23 | – | – | |
| Phobius | 257 | 281 | 25 | – | – | |
| Phobius | 282 | 301 | 20 | – | – | |
| TMHMM | 297 | 319 | 23 | – | – | |
| Phobius | 302 | 320 | 19 | – | – | |
| Phobius | 321 | 325 | 5 | – | – | |
| TMHMM | 324 | 346 | 23 | – | – | |
| Phobius | 326 | 346 | 21 | – | – | |
| Phobius | 347 | 352 | 6 | – | – | |
| Phobius | 353 | 376 | 24 | – | – | |
| TMHMM | 353 | 375 | 23 | – | – | |
| Phobius | 377 | 407 | 31 | – | – | |
| TMHMM | 407 | 429 | 23 | – | – | |
| Phobius | 408 | 428 | 21 | – | – | |
| Phobius | 429 | 439 | 11 | – | – | |
| Phobius | 440 | 461 | 22 | – | – | |
| TMHMM | 441 | 463 | 23 | – | – | |
| Phobius | 462 | 472 | 11 | – | – | |
| TMHMM | 473 | 491 | 19 | – | – | |
| Phobius | 473 | 491 | 19 | – | – | |
| Phobius | 492 | 511 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj5g3v2302910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2302910.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.