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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0143880 |
| Transcript ID | Lj6g3v0143880.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Cicer arietinum] gi|502170587|ref|XP_004514863.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 120 | 120 | – | – | |
| SignalP | 1 | 23 | 23 | – | – | |
| PANTHER | 56 | 76 | 21 | 0 | – | |
| PANTHER | 56 | 76 | 21 | 0 | – | |
| PANTHER | 99 | 138 | 40 | 0 | – | |
| PANTHER | 99 | 138 | 40 | 0 | – | |
| SUPERFAMILY | 101 | 215 | 115 | 4.34E-19 | ||
| Gene3D | 134 | 227 | 94 | 6.90E-18 | ||
| ProSiteProfiles | 137 | 218 | 82 | 15.733 | ||
| SMART | 138 | 214 | 77 | 5.70E-15 | ||
| Pfam | 139 | 211 | 73 | 7.30E-12 | ||
| CDD | 139 | 214 | 76 | 3.02E-14 | – | |
| MobiDBLite | 226 | 251 | 26 | – | – | |
| PANTHER | 264 | 546 | 283 | 0 | – | |
| PANTHER | 264 | 546 | 283 | 0 | – | |
| ProSiteProfiles | 281 | 315 | 35 | 10.468 | ||
| Pfam | 285 | 313 | 29 | 0.0038 | ||
| TIGRFAM | 285 | 316 | 32 | 7.00E-07 | ||
| Pfam | 315 | 364 | 50 | 2.30E-09 | ||
| ProSiteProfiles | 316 | 350 | 35 | 10.161 | ||
| TIGRFAM | 319 | 351 | 33 | 1.10E-05 | ||
| ProSiteProfiles | 351 | 381 | 31 | 6.73 | ||
| SUPERFAMILY | 382 | 558 | 177 | 4.93E-05 | ||
| ProSiteProfiles | 386 | 420 | 35 | 8.649 | ||
| Pfam | 388 | 418 | 31 | 0.12 | ||
| ProSiteProfiles | 421 | 455 | 35 | 8.912 | ||
| Pfam | 424 | 453 | 30 | 0.016 | ||
| TIGRFAM | 424 | 457 | 34 | 0.0021 | ||
| Pfam | 455 | 503 | 49 | 5.40E-11 | ||
| ProSiteProfiles | 456 | 490 | 35 | 9.635 | ||
| TIGRFAM | 458 | 491 | 34 | 6.80E-04 | ||
| Gene3D | 489 | 576 | 88 | 1.60E-10 | ||
| ProSiteProfiles | 491 | 525 | 35 | 11.181 | ||
| TIGRFAM | 494 | 527 | 34 | 4.40E-06 | ||
| Pfam | 513 | 566 | 54 | 9.30E-09 | ||
| ProSiteProfiles | 526 | 560 | 35 | 11.389 | ||
| TIGRFAM | 528 | 561 | 34 | 1.20E-05 | ||
| ProSiteProfiles | 561 | 595 | 35 | 11.016 | ||
| TIGRFAM | 564 | 596 | 33 | 4.30E-06 | ||
| Pfam | 568 | 593 | 26 | 0.0023 | ||
| PANTHER | 595 | 847 | 253 | 0 | – | |
| Pfam | 595 | 643 | 49 | 2.10E-13 | ||
| PANTHER | 595 | 847 | 253 | 0 | – | |
| ProSiteProfiles | 596 | 630 | 35 | 10.797 | ||
| TIGRFAM | 598 | 632 | 35 | 2.10E-05 | ||
| SUPERFAMILY | 630 | 672 | 43 | 4.93E-05 | ||
| ProSiteProfiles | 631 | 665 | 35 | 10.589 | ||
| TIGRFAM | 633 | 667 | 35 | 9.10E-06 | ||
| Gene3D | 634 | 798 | 165 | 1.60E-10 | ||
| ProSiteProfiles | 666 | 700 | 35 | 10.556 | ||
| Pfam | 668 | 696 | 29 | 0.034 | ||
| TIGRFAM | 668 | 701 | 34 | 1.00E-04 | ||
| Pfam | 701 | 749 | 49 | 7.80E-15 | ||
| ProSiteProfiles | 701 | 735 | 35 | 11.915 | ||
| TIGRFAM | 704 | 737 | 34 | 2.10E-06 | ||
| SUPERFAMILY | 705 | 762 | 58 | 4.93E-05 | ||
| ProSiteProfiles | 736 | 770 | 35 | 13.45 | ||
| TIGRFAM | 738 | 771 | 34 | 1.30E-09 | ||
| Pfam | 759 | 814 | 56 | 1.60E-09 | ||
| ProSiteProfiles | 771 | 805 | 35 | 12.419 | ||
| TIGRFAM | 774 | 806 | 33 | 9.90E-09 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0143880.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0143880.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.