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Lj6g3v0466820.1

Overview

Field Value
Gene ID Lj6g3v0466820
Transcript ID Lj6g3v0466820.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Glycine max] gi|356568033|ref|XP_003552218.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
12 232 221 1.00E-68
IPR027417
PANTHER
PTHR24031:SF2
13 232 220 1.40E-289 –
PANTHER
PTHR24031
13 232 220 1.40E-289 –
CDD
cd00268
16 226 211 3.85E-80 –
ProSiteProfiles
PS51195
16 44 29 8.802
IPR014014
SMART
SM00487
35 241 207 2.20E-47
IPR014001
Pfam
PF00270
40 214 175 4.60E-43
IPR011545
ProSiteProfiles
PS51192
47 225 179 28.522
IPR014001
SUPERFAMILY
SSF52540
91 395 305 1.49E-59
IPR027417
ProSitePatterns
PS00039
171 179 9 –
IPR000629
Gene3D
G3DSA:3.40.50.300
236 397 162 1.40E-37
IPR027417
PANTHER
PTHR24031
248 579 332 1.40E-289 –
PANTHER
PTHR24031:SF2
248 579 332 1.40E-289 –
CDD
cd00079
252 384 133 3.25E-27 –
Pfam
PF00271
264 376 113 1.60E-22
IPR001650
ProSiteProfiles
PS51194
267 423 157 18.257
IPR001650
SMART
SM00490
295 376 82 2.40E-25
IPR001650
SMART
SM01178
414 477 64 2.20E-25
IPR025313
Pfam
PF13959
417 473 57 1.60E-19
IPR025313
Coils
Coil
504 524 21 – –
MobiDBLite
mobidb-lite
505 560 56 – –
Coils
Coil
540 567 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj6g3v0466820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0466820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.