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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0497300 |
| Transcript ID | Lj6g3v0497300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: clathrin heavy chain 1-like [Glycine max] gi|356539985|ref|XP_003538472.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 1687 | 1684 | 0 | ||
| PANTHER | 4 | 1697 | 1694 | 0 | – | |
| PANTHER | 4 | 1697 | 1694 | 0 | – | |
| Gene3D | 5 | 377 | 373 | 2.10E-155 | ||
| SUPERFAMILY | 6 | 344 | 339 | 3.66E-130 | ||
| Pfam | 21 | 56 | 36 | 7.80E-06 | ||
| Pfam | 155 | 198 | 44 | 2.40E-10 | ||
| Pfam | 345 | 368 | 24 | 1.70E-06 | ||
| SUPERFAMILY | 346 | 501 | 156 | 2.76E-52 | ||
| Pfam | 370 | 435 | 66 | 6.10E-29 | – | |
| SUPERFAMILY | 458 | 794 | 337 | 2.65E-84 | ||
| SMART | 552 | 694 | 143 | 9.70E-32 | ||
| ProSiteProfiles | 552 | 698 | 147 | 33.898 | ||
| Pfam | 558 | 691 | 134 | 1.90E-19 | ||
| SMART | 701 | 843 | 143 | 3.70E-39 | ||
| ProSiteProfiles | 701 | 843 | 143 | 31.976 | ||
| Pfam | 702 | 841 | 140 | 2.80E-20 | ||
| Gene3D | 718 | 940 | 223 | 5.00E-41 | ||
| SMART | 848 | 987 | 140 | 2.80E-41 | ||
| ProSiteProfiles | 848 | 987 | 140 | 36.747 | ||
| Pfam | 851 | 984 | 134 | 8.30E-28 | ||
| SUPERFAMILY | 902 | 1060 | 159 | 4.03E-34 | ||
| Pfam | 994 | 1132 | 139 | 2.30E-30 | ||
| SMART | 994 | 1139 | 146 | 1.50E-41 | ||
| ProSiteProfiles | 994 | 1139 | 146 | 41.969 | ||
| SUPERFAMILY | 1051 | 1196 | 146 | 1.47E-27 | ||
| ProSiteProfiles | 1143 | 1284 | 142 | 34.39 | ||
| SMART | 1143 | 1284 | 142 | 2.40E-37 | ||
| Pfam | 1148 | 1282 | 135 | 3.10E-27 | ||
| SUPERFAMILY | 1197 | 1532 | 336 | 2.47E-107 | ||
| Gene3D | 1198 | 1536 | 339 | 1.60E-149 | ||
| SMART | 1289 | 1435 | 147 | 4.60E-43 | ||
| ProSiteProfiles | 1289 | 1435 | 147 | 41.402 | ||
| Pfam | 1290 | 1433 | 144 | 2.60E-28 | ||
| SMART | 1438 | 1597 | 160 | 1.20E-42 | ||
| ProSiteProfiles | 1438 | 1581 | 144 | 39.185 | ||
| Pfam | 1440 | 1580 | 141 | 7.60E-30 | ||
| Coils | 1478 | 1498 | 21 | – | – | |
| Gene3D | 1537 | 1658 | 122 | 1.00E-27 | ||
| Coils | 1618 | 1653 | 36 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Clathrin coat of trans-Golgi network vesicle | A clathrin coat found on a vesicle of the trans-Golgi network. | ||
| Cellular component | Clathrin coat of coated pit | The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex. | ||
| Molecular function | Clathrin light chain binding | Interacting selectively and non-covalently with a clathrin light chain. | ||
| Cellular component | Clathrin complex | A protein complex that consists of three clathrin heavy chains and three clathrin light chains, organized into a symmetrical three-legged structure called a triskelion. In clathrin-coated vesicles clathrin is the main component of the coat and forms a polymeric mechanical scaffold on the vesicle surface. |
Expression pattern of Lj6g3v0497300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0497300.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.