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Lj6g3v0727750.2

Overview

Field Value
Gene ID Lj6g3v0727750
Transcript ID Lj6g3v0727750.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description AT5G55920 [Arabidopsis thaliana] gi|222423014|dbj|BAH19490.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22807
1 272 272 5.60E-156 –
PANTHER
PTHR22807:SF30
1 272 272 5.60E-156 –
ProSiteProfiles
PS51686
1 228 228 65.49
IPR001678
TIGRFAM
TIGR00446
2 227 226 3.80E-86
IPR011023
SUPERFAMILY
SSF53335
2 227 226 2.63E-54
IPR029063
Gene3D
G3DSA:3.40.50.150
10 227 218 9.30E-61
IPR029063
Pfam
PF01189
16 225 210 3.40E-73
IPR001678
PRINTS
PR02008
28 38 11 9.50E-25
IPR023267
ProSitePatterns
PS01153
95 106 12 –
IPR018314
PRINTS
PR02008
96 108 13 9.50E-25
IPR023267
PRINTS
PR02008
150 166 17 9.50E-25
IPR023267
PRINTS
PR02008
210 227 18 9.50E-25
IPR023267
MobiDBLite
mobidb-lite
230 276 47 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0008757
Molecular function S-adenosylmethionine-dependent methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
Subterm of

Genome browser

LORE1 insertions 114

Expression data

Expression pattern

Expression pattern of Lj6g3v0727750.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0727750.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.