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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0938270 |
| Transcript ID | Lj6g3v0938270.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Cicer arietinum] gi|502165078|ref|XP_004513405.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 11 | 8 | – | – | |
| Phobius | 12 | 16 | 5 | – | – | |
| Phobius | 17 | 729 | 713 | – | – | |
| PANTHER | 21 | 51 | 31 | 0 | – | |
| PANTHER | 21 | 51 | 31 | 0 | – | |
| PANTHER | 68 | 597 | 530 | 0 | – | |
| PANTHER | 68 | 597 | 530 | 0 | – | |
| ProSiteProfiles | 81 | 111 | 31 | 8.89 | ||
| Gene3D | 81 | 143 | 63 | 3.60E-10 | ||
| TIGRFAM | 83 | 108 | 26 | 2.20E-04 | ||
| Pfam | 83 | 108 | 26 | 4.60E-04 | ||
| Pfam | 111 | 158 | 48 | 1.70E-08 | ||
| ProSiteProfiles | 112 | 146 | 35 | 10.073 | ||
| TIGRFAM | 114 | 147 | 34 | 6.00E-04 | ||
| ProSiteProfiles | 180 | 210 | 31 | 7.125 | ||
| Pfam | 183 | 208 | 26 | 0.14 | ||
| ProSiteProfiles | 213 | 247 | 35 | 10.852 | ||
| Pfam | 213 | 259 | 47 | 3.60E-07 | ||
| TIGRFAM | 215 | 248 | 34 | 6.20E-06 | ||
| ProSiteProfiles | 248 | 282 | 35 | 6.61 | ||
| SUPERFAMILY | 302 | 558 | 257 | 1.77E-06 | ||
| Pfam | 315 | 363 | 49 | 1.00E-10 | ||
| ProSiteProfiles | 316 | 351 | 36 | 11.619 | ||
| TIGRFAM | 318 | 352 | 35 | 7.30E-06 | ||
| ProSiteProfiles | 352 | 386 | 35 | 5.097 | ||
| Gene3D | 386 | 577 | 192 | 3.60E-10 | ||
| ProSiteProfiles | 388 | 418 | 31 | 8.057 | ||
| Pfam | 393 | 419 | 27 | 0.01 | ||
| ProSiteProfiles | 419 | 453 | 35 | 10.72 | ||
| TIGRFAM | 421 | 454 | 34 | 5.90E-06 | ||
| Pfam | 442 | 502 | 61 | 4.20E-04 | ||
| ProSiteProfiles | 454 | 484 | 31 | 8.835 | ||
| TIGRFAM | 456 | 489 | 34 | 0.001 | ||
| ProSiteProfiles | 490 | 520 | 31 | 7.509 | ||
| ProSiteProfiles | 522 | 552 | 31 | 5.218 | ||
| ProSiteProfiles | 556 | 590 | 35 | 9.142 | ||
| Pfam | 560 | 588 | 29 | 0.85 | ||
| Pfam | 592 | 719 | 128 | 4.60E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj6g3v0938270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0938270.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.