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Lj6g3v1077660.1

Overview

Field Value
Gene ID Lj6g3v1077660
Transcript ID Lj6g3v1077660.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: signal recognition particle receptor subunit alpha-like [Glycine max] gi|356517002|ref|XP_003527179.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY 1 120 120 1.65E-32
Pfam 28 301 274 4.90E-65
MobiDBLite 131 245 115
MobiDBLite 282 318 37
PANTHER 309 585 277 1.60E-154
PANTHER 309 585 277 1.60E-154
SMART 316 398 83 0.0028
SUPERFAMILY 319 400 82 5.23E-12
Gene3D 320 400 81 4.60E-13
Pfam 321 388 68 3.00E-07
Gene3D 415 584 170 2.70E-55
SUPERFAMILY 416 581 166 2.07E-34
SMART 418 558 141 5.10E-08
SMART 419 584 166 2.40E-46
Pfam 420 579 160 3.60E-43

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Molecular function Signal recognition particle binding Interacting selectively and non-covalently with the signal recognition particle.
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Cellular component Signal recognition particle receptor complex A transmembrane heterodimeric protein located in the membrane of the rough endoplasmic reticulum. Both subunits contain GTPase domains with which signal recognition particle interacts. In the presence of GTP and SRP receptor, SRP is released from the ribosome-nascent chain complex.
Biological process SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj6g3v1077660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1077660.1, powered by CORGI.

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