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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1333010 |
| Transcript ID | Lj6g3v1333010.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pathogenesis-related homeodomain protein-like [Cicer arietinum] gi|502085745|ref|XP_004487993.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 118 | 118 | – | – | |
| PANTHER | 74 | 716 | 643 | 1.30E-214 | – | |
| PANTHER | 74 | 716 | 643 | 1.30E-214 | – | |
| SUPERFAMILY | 225 | 291 | 67 | 7.09E-14 | ||
| Gene3D | 230 | 290 | 61 | 2.30E-12 | ||
| ProSiteProfiles | 232 | 289 | 58 | 10.567 | ||
| SMART | 234 | 287 | 54 | 1.20E-09 | ||
| Pfam | 234 | 289 | 56 | 1.20E-10 | ||
| CDD | 234 | 286 | 53 | 5.49E-28 | – | |
| ProSitePatterns | 235 | 286 | 52 | – | ||
| MobiDBLite | 320 | 380 | 61 | – | – | |
| MobiDBLite | 430 | 491 | 62 | – | – | |
| Gene3D | 478 | 541 | 64 | 3.40E-10 | ||
| SUPERFAMILY | 485 | 542 | 58 | 1.33E-09 | ||
| ProSiteProfiles | 487 | 547 | 61 | 11.013 | ||
| SMART | 489 | 551 | 63 | 7.70E-07 | ||
| CDD | 495 | 551 | 57 | 5.72E-07 | – | |
| Pfam | 497 | 542 | 46 | 4.70E-08 | ||
| MobiDBLite | 548 | 576 | 29 | – | – | |
| Coils | 661 | 688 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of Lj6g3v1333010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1333010.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.