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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1344390 |
| Transcript ID | Lj6g3v1344390.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial-like [Glycine max] gi|356558306|ref|XP_003547448.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 29 | 26 | 3.50E-239 | – | |
| PANTHER | 4 | 29 | 26 | 3.50E-239 | – | |
| ProSiteProfiles | 48 | 78 | 31 | 5.053 | ||
| ProSiteProfiles | 85 | 121 | 37 | 6.928 | ||
| PANTHER | 100 | 391 | 292 | 3.50E-239 | – | |
| PANTHER | 100 | 391 | 292 | 3.50E-239 | – | |
| ProSiteProfiles | 123 | 157 | 35 | 7.377 | ||
| ProSiteProfiles | 160 | 194 | 35 | 8.539 | ||
| Pfam | 163 | 186 | 24 | 0.008 | ||
| ProSiteProfiles | 196 | 230 | 35 | 9.931 | ||
| Pfam | 198 | 228 | 31 | 1.80E-04 | ||
| TIGRFAM | 198 | 231 | 34 | 4.80E-06 | ||
| ProSiteProfiles | 231 | 265 | 35 | 7.18 | ||
| Pfam | 262 | 293 | 32 | 1.50E-05 | ||
| ProSiteProfiles | 266 | 300 | 35 | 11.751 | ||
| TIGRFAM | 268 | 301 | 34 | 2.70E-07 | ||
| Gene3D | 279 | 332 | 54 | 1.40E-08 | ||
| Pfam | 300 | 349 | 50 | 4.60E-15 | ||
| ProSiteProfiles | 301 | 335 | 35 | 13.252 | ||
| TIGRFAM | 303 | 336 | 34 | 1.20E-09 | ||
| ProSiteProfiles | 336 | 370 | 35 | 13.318 | ||
| TIGRFAM | 339 | 372 | 34 | 1.30E-08 | ||
| Pfam | 366 | 391 | 26 | 2.10E-05 | ||
| ProSiteProfiles | 371 | 394 | 24 | 6.423 | ||
| TIGRFAM | 373 | 393 | 21 | 0.0015 | ||
| Pfam | 396 | 446 | 51 | 6.10E-04 | ||
| ProSiteProfiles | 401 | 435 | 35 | 8.254 | ||
| ProSiteProfiles | 436 | 470 | 35 | 9.788 | ||
| TIGRFAM | 438 | 471 | 34 | 0.0012 | ||
| Pfam | 467 | 497 | 31 | 7.20E-13 | ||
| Gene3D | 469 | 522 | 54 | 1.40E-08 | ||
| PANTHER | 470 | 500 | 31 | 3.50E-239 | – | |
| PANTHER | 470 | 500 | 31 | 3.50E-239 | – | |
| ProSiteProfiles | 471 | 505 | 35 | 12.452 | ||
| TIGRFAM | 473 | 503 | 31 | 1.60E-09 | ||
| TIGRFAM | 508 | 535 | 28 | 0.0012 | ||
| Pfam | 508 | 536 | 29 | 5.90E-04 | ||
| ProSiteProfiles | 509 | 539 | 31 | 6.829 | ||
| PANTHER | 535 | 543 | 9 | 3.50E-239 | – | |
| PANTHER | 535 | 543 | 9 | 3.50E-239 | – | |
| ProSiteProfiles | 540 | 574 | 35 | 7.947 | ||
| ProSiteProfiles | 577 | 611 | 35 | 7.585 | ||
| Pfam | 589 | 609 | 21 | 0.33 | ||
| ProSiteProfiles | 711 | 745 | 35 | 8.111 | ||
| PANTHER | 715 | 927 | 213 | 3.50E-239 | – | |
| Pfam | 715 | 742 | 28 | 0.018 | ||
| TIGRFAM | 715 | 746 | 32 | 0.0029 | ||
| PANTHER | 715 | 927 | 213 | 3.50E-239 | – | |
| ProSiteProfiles | 746 | 780 | 35 | 12.211 | ||
| Pfam | 746 | 794 | 49 | 2.90E-13 | ||
| TIGRFAM | 748 | 781 | 34 | 2.50E-07 | ||
| SUPERFAMILY | 751 | 916 | 166 | 3.98E-05 | ||
| ProSiteProfiles | 781 | 815 | 35 | 11.005 | ||
| TIGRFAM | 783 | 815 | 33 | 8.10E-06 | ||
| Pfam | 815 | 864 | 50 | 2.70E-12 | ||
| ProSiteProfiles | 816 | 850 | 35 | 11.192 | ||
| Gene3D | 819 | 956 | 138 | 1.40E-08 | ||
| TIGRFAM | 819 | 851 | 33 | 3.60E-06 | ||
| ProSiteProfiles | 851 | 885 | 35 | 10.227 | ||
| TIGRFAM | 854 | 886 | 33 | 2.10E-06 | ||
| ProSiteProfiles | 886 | 920 | 35 | 8.714 | ||
| TIGRFAM | 893 | 917 | 25 | 6.70E-04 | ||
| Pfam | 893 | 916 | 24 | 0.0031 | ||
| ProSiteProfiles | 931 | 965 | 35 | 6.226 | ||
| ProSiteProfiles | 1031 | 1061 | 31 | 5.59 | ||
| Coils | 1048 | 1067 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1344390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1344390.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.