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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1447650 |
| Transcript ID | Lj6g3v1447650.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 4-like [Glycine max] gi|356529566|ref|XP_003533361.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | – | – | |
| PANTHER | 22 | 1503 | 1482 | 0 | – | |
| PANTHER | 22 | 1503 | 1482 | 0 | – | |
| TMHMM | 44 | 66 | 23 | – | – | |
| Phobius | 44 | 67 | 24 | – | – | |
| Phobius | 68 | 99 | 32 | – | – | |
| Phobius | 100 | 121 | 22 | – | – | |
| TMHMM | 100 | 122 | 23 | – | – | |
| Phobius | 122 | 132 | 11 | – | – | |
| TMHMM | 132 | 151 | 20 | – | – | |
| Phobius | 133 | 151 | 19 | – | – | |
| Phobius | 152 | 162 | 11 | – | – | |
| Phobius | 163 | 185 | 23 | – | – | |
| TMHMM | 168 | 190 | 23 | – | – | |
| Phobius | 186 | 204 | 19 | – | – | |
| TMHMM | 205 | 222 | 18 | – | – | |
| Phobius | 205 | 222 | 18 | – | – | |
| Phobius | 223 | 327 | 105 | – | – | |
| SUPERFAMILY | 318 | 621 | 304 | 1.16E-35 | ||
| Gene3D | 319 | 621 | 303 | 1.70E-27 | – | |
| Phobius | 328 | 349 | 22 | – | – | |
| ProSiteProfiles | 329 | 609 | 281 | 31.55 | ||
| Pfam | 330 | 597 | 268 | 1.50E-29 | ||
| TMHMM | 330 | 352 | 23 | – | – | |
| Phobius | 350 | 368 | 19 | – | – | |
| TMHMM | 367 | 389 | 23 | – | – | |
| Phobius | 369 | 389 | 21 | – | – | |
| Phobius | 390 | 439 | 50 | – | – | |
| Phobius | 440 | 461 | 22 | – | – | |
| TMHMM | 440 | 462 | 23 | – | – | |
| Phobius | 462 | 466 | 5 | – | – | |
| TMHMM | 466 | 485 | 20 | – | – | |
| Phobius | 467 | 485 | 19 | – | – | |
| Phobius | 486 | 544 | 59 | – | – | |
| TMHMM | 545 | 567 | 23 | – | – | |
| Phobius | 545 | 568 | 24 | – | – | |
| Phobius | 569 | 573 | 5 | – | – | |
| Phobius | 574 | 593 | 20 | – | – | |
| Phobius | 594 | 942 | 349 | – | – | |
| SUPERFAMILY | 640 | 862 | 223 | 5.80E-55 | ||
| Gene3D | 643 | 876 | 234 | 1.30E-62 | ||
| CDD | 643 | 843 | 201 | 2.12E-108 | – | |
| ProSiteProfiles | 643 | 866 | 224 | 22.783 | ||
| Pfam | 665 | 794 | 130 | 7.30E-18 | ||
| SMART | 670 | 843 | 174 | 1.30E-10 | ||
| ProSitePatterns | 768 | 782 | 15 | – | ||
| MobiDBLite | 874 | 920 | 47 | – | – | |
| TMHMM | 942 | 964 | 23 | – | – | |
| Phobius | 943 | 965 | 23 | – | – | |
| Gene3D | 945 | 1245 | 301 | 2.20E-53 | – | |
| SUPERFAMILY | 945 | 1249 | 305 | 1.29E-44 | ||
| ProSiteProfiles | 945 | 1226 | 282 | 27.827 | ||
| Phobius | 966 | 984 | 19 | – | – | |
| Pfam | 969 | 1190 | 222 | 2.10E-23 | ||
| TMHMM | 984 | 1006 | 23 | – | – | |
| Phobius | 985 | 1011 | 27 | – | – | |
| Phobius | 1012 | 1049 | 38 | – | – | |
| Phobius | 1050 | 1075 | 26 | – | – | |
| TMHMM | 1054 | 1076 | 23 | – | – | |
| Phobius | 1076 | 1080 | 5 | – | – | |
| Phobius | 1081 | 1098 | 18 | – | – | |
| Phobius | 1099 | 1173 | 75 | – | – | |
| TMHMM | 1167 | 1189 | 23 | – | – | |
| Phobius | 1174 | 1194 | 21 | – | – | |
| Phobius | 1195 | 1205 | 11 | – | – | |
| TMHMM | 1199 | 1218 | 20 | – | – | |
| Phobius | 1206 | 1224 | 19 | – | – | |
| Phobius | 1225 | 1503 | 279 | – | – | |
| SUPERFAMILY | 1255 | 1496 | 242 | 6.06E-67 | ||
| CDD | 1261 | 1481 | 221 | 3.65E-126 | – | |
| Gene3D | 1263 | 1497 | 235 | 5.30E-65 | ||
| ProSiteProfiles | 1263 | 1497 | 235 | 18.174 | ||
| Pfam | 1280 | 1428 | 149 | 9.30E-29 | ||
| SMART | 1289 | 1473 | 185 | 2.70E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj6g3v1447650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1447650.1, powered by CORGI.
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