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Lj6g3v1692680.1

Overview

Field Value
Gene ID Lj6g3v1692680
Transcript ID Lj6g3v1692680.1
Lotus japonicus genome version MG20 v3.0
Description Vesicle-associated membrane protein [Medicago truncatula] gi|357448351|ref|XP_003594451.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 200 200 – –
Gene3D
G3DSA:3.30.450.50
6 116 111 4.60E-44
IPR010908
PANTHER
PTHR21136:SF92
9 224 216 7.80E-178 –
PANTHER
PTHR21136
9 224 216 7.80E-178 –
SUPERFAMILY
SSF64356
13 128 116 1.71E-27
IPR011012
ProSiteProfiles
PS50859
17 121 105 27.066
IPR010908
SMART
SM01270
38 120 83 3.50E-25
IPR010908
Pfam
PF13774
41 118 78 2.20E-22
IPR010908
Gene3D
G3DSA:1.10.3840.10
117 220 104 1.60E-48
IPR001388
SUPERFAMILY
SSF58038
132 199 68 4.76E-23 –
Pfam
PF00957
136 220 85 4.90E-32
IPR001388
ProSiteProfiles
PS50892
137 197 61 18.683
IPR001388
CDD
cd15843
137 195 59 9.48E-26 –
PRINTS
PR00219
142 161 20 8.20E-20
IPR001388
ProSitePatterns
PS00417
155 174 20 –
IPR001388
PRINTS
PR00219
162 181 20 8.20E-20
IPR001388
PRINTS
PR00219
198 217 20 8.20E-20
IPR001388
Phobius
TRANSMEMBRANE
201 220 20 – –
TMHMM
TMhelix
201 223 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
221 226 6 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj6g3v1692680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1692680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.