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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1742780 |
| Transcript ID | Lj6g3v1742780.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transcriptional adapter ADA2b-like [Glycine max] gi|356557975|ref|XP_003547285.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | – | – | |
| PANTHER | 6 | 162 | 157 | 2.70E-238 | – | |
| PANTHER | 6 | 162 | 157 | 2.70E-238 | – | |
| PIRSF | 36 | 556 | 521 | 5.00E-149 | ||
| SMART | 45 | 90 | 46 | 2.80E-11 | ||
| Pfam | 47 | 89 | 43 | 2.20E-09 | ||
| CDD | 49 | 97 | 49 | 7.67E-27 | – | |
| SUPERFAMILY | 49 | 111 | 63 | 1.00E-14 | – | |
| ProSiteProfiles | 49 | 92 | 44 | 10.869 | ||
| ProSitePatterns | 51 | 78 | 28 | – | ||
| SUPERFAMILY | 102 | 155 | 54 | 3.04E-12 | ||
| ProSiteProfiles | 104 | 156 | 53 | 20.001 | ||
| SMART | 105 | 154 | 50 | 1.00E-10 | ||
| Pfam | 108 | 151 | 44 | 2.20E-11 | ||
| Gene3D | 109 | 151 | 43 | 1.60E-07 | ||
| CDD | 109 | 151 | 43 | 4.02E-11 | – | |
| MobiDBLite | 179 | 286 | 108 | – | – | |
| PANTHER | 242 | 553 | 312 | 2.70E-238 | – | |
| PANTHER | 242 | 553 | 312 | 2.70E-238 | – | |
| SUPERFAMILY | 469 | 554 | 86 | 5.02E-19 | ||
| ProSiteProfiles | 471 | 557 | 87 | 11.957 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Regulation of histone acetylation | Any process that modulates the frequency, rate or extent of the addition of an acetyl group to a histone protein. |
Expression pattern of Lj6g3v1742780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1742780.1, powered by CORGI.
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