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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1916060 |
| Transcript ID | Lj6g3v1916060.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356546474|ref|XP_003541651.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 65 | 264 | 200 | 9.83E-76 | ||
| Hamap | 67 | 701 | 635 | 42.09 | ||
| Pfam | 68 | 353 | 286 | 6.70E-113 | ||
| TIGRFAM | 70 | 700 | 631 | 1.70E-229 | ||
| PANTHER | 81 | 287 | 207 | 0 | ||
| PANTHER | 81 | 287 | 207 | 0 | – | |
| Gene3D | 82 | 264 | 183 | 8.40E-76 | ||
| ProSitePatterns | 93 | 112 | 20 | – | ||
| CDD | 104 | 359 | 256 | 1.60E-121 | ||
| PANTHER | 310 | 711 | 402 | 0 | ||
| PANTHER | 310 | 711 | 402 | 0 | – | |
| Gene3D | 311 | 404 | 94 | 8.40E-76 | ||
| SUPERFAMILY | 312 | 452 | 141 | 9.83E-76 | ||
| SUPERFAMILY | 387 | 577 | 191 | 1.73E-60 | ||
| SMART | 390 | 555 | 166 | 9.40E-68 | ||
| Pfam | 391 | 551 | 161 | 1.00E-44 | ||
| Gene3D | 405 | 569 | 165 | 3.60E-38 | ||
| CDD | 407 | 549 | 143 | 2.54E-66 | – | |
| ProSitePatterns | 496 | 512 | 17 | – | ||
| SUPERFAMILY | 564 | 700 | 137 | 1.44E-33 | ||
| Pfam | 569 | 692 | 124 | 4.60E-30 | ||
| Gene3D | 570 | 700 | 131 | 1.00E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of Lj6g3v1916060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1916060.1, powered by CORGI.
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