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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1934080 |
| Transcript ID | Lj6g3v1934080.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: potassium channel KAT1-like isoform X3 [Cicer arietinum] gi|502078700|ref|XP_004486028.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | – | – | |
| SUPERFAMILY | 17 | 257 | 241 | 2.35E-42 | – | |
| Pfam | 17 | 264 | 248 | 3.70E-35 | ||
| PANTHER | 18 | 572 | 555 | 0 | – | |
| Gene3D | 18 | 257 | 240 | 4.40E-45 | – | |
| PANTHER | 18 | 572 | 555 | 0 | – | |
| TMHMM | 20 | 42 | 23 | – | – | |
| Phobius | 22 | 42 | 21 | – | – | |
| PRINTS | 30 | 37 | 8 | 2.30E-10 | ||
| Phobius | 43 | 53 | 11 | – | – | |
| TMHMM | 49 | 71 | 23 | – | – | |
| PRINTS | 53 | 63 | 11 | 2.30E-10 | ||
| Phobius | 54 | 72 | 19 | – | – | |
| PRINTS | 64 | 73 | 10 | 2.30E-10 | ||
| Phobius | 73 | 91 | 19 | – | – | |
| Phobius | 92 | 113 | 22 | – | – | |
| Phobius | 114 | 151 | 38 | – | – | |
| Phobius | 152 | 177 | 26 | – | – | |
| TMHMM | 159 | 178 | 20 | – | – | |
| Phobius | 178 | 204 | 27 | – | – | |
| PRINTS | 205 | 222 | 18 | 2.30E-10 | ||
| Phobius | 205 | 224 | 20 | – | – | |
| Phobius | 225 | 235 | 11 | – | – | |
| PRINTS | 231 | 242 | 12 | 2.30E-10 | ||
| Phobius | 236 | 260 | 25 | – | – | |
| TMHMM | 238 | 260 | 23 | – | – | |
| PRINTS | 249 | 258 | 10 | 2.30E-10 | ||
| Phobius | 261 | 701 | 441 | – | – | |
| SUPERFAMILY | 278 | 465 | 188 | 8.71E-39 | ||
| Gene3D | 340 | 468 | 129 | 9.60E-22 | ||
| CDD | 345 | 458 | 114 | 3.68E-23 | – | |
| SMART | 345 | 462 | 118 | 5.00E-20 | ||
| ProSiteProfiles | 345 | 464 | 120 | 21.292 | ||
| Pfam | 364 | 449 | 86 | 7.10E-12 | ||
| ProSiteProfiles | 539 | 571 | 33 | 9.484 | ||
| ProSiteProfiles | 539 | 571 | 33 | 9.463 | ||
| Gene3D | 545 | 575 | 31 | 6.90E-04 | ||
| PANTHER | 615 | 667 | 53 | 0 | – | |
| PANTHER | 615 | 667 | 53 | 0 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj6g3v1934080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1934080.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.