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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1946530 |
| Transcript ID | Lj6g3v1946530.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Glycine max] gi|356557797|ref|XP_003547197.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 96 | 96 | 7.90E-54 | – | |
| PANTHER | 1 | 96 | 96 | 7.90E-54 | ||
| SUPERFAMILY | 4 | 74 | 71 | 6.03E-19 | – | |
| Gene3D | 5 | 71 | 67 | 1.70E-18 | ||
| CDD | 12 | 54 | 43 | 4.99E-06 | – | |
| Pfam | 12 | 50 | 39 | 2.90E-09 | – | |
| SMART | 13 | 50 | 38 | 2.50E-07 | ||
| ProSiteProfiles | 13 | 51 | 39 | 9.981 | ||
| ProSitePatterns | 28 | 37 | 10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Cellular response to DNA damage stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. |
Expression pattern of Lj6g3v1946530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1946530.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.