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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2006990 |
| Transcript ID | Lj6g3v2006990.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Chloride channel protein CLC-c [Medicago truncatula] gi|357445225|ref|XP_003592890.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 377 | 377 | 0 | – | |
| Phobius | 1 | 66 | 66 | – | – | |
| PANTHER | 1 | 377 | 377 | 0 | – | |
| CDD | 40 | 560 | 521 | 0 | – | |
| PRINTS | 45 | 53 | 9 | 9.10E-17 | ||
| SUPERFAMILY | 49 | 378 | 330 | 3.79E-100 | ||
| Gene3D | 56 | 378 | 323 | 5.90E-124 | ||
| Phobius | 67 | 88 | 22 | – | – | |
| TMHMM | 67 | 89 | 23 | – | – | |
| Phobius | 89 | 116 | 28 | – | – | |
| TMHMM | 116 | 138 | 23 | – | – | |
| Phobius | 117 | 140 | 24 | – | – | |
| Pfam | 128 | 541 | 414 | 5.60E-91 | ||
| PRINTS | 140 | 157 | 18 | 3.60E-63 | ||
| Phobius | 141 | 160 | 20 | – | – | |
| TMHMM | 159 | 181 | 23 | – | – | |
| Phobius | 161 | 185 | 25 | – | – | |
| PRINTS | 171 | 190 | 20 | 3.60E-63 | ||
| Phobius | 186 | 190 | 5 | – | – | |
| Phobius | 191 | 207 | 17 | – | – | |
| Phobius | 208 | 227 | 20 | – | – | |
| Phobius | 228 | 252 | 25 | – | – | |
| TMHMM | 229 | 251 | 23 | – | – | |
| PRINTS | 235 | 254 | 20 | 3.60E-63 | ||
| Phobius | 253 | 263 | 11 | – | – | |
| PRINTS | 256 | 264 | 9 | 9.10E-17 | ||
| TMHMM | 263 | 285 | 23 | – | – | |
| Phobius | 264 | 282 | 19 | – | – | |
| PRINTS | 270 | 280 | 11 | 9.10E-17 | ||
| Phobius | 283 | 288 | 6 | – | – | |
| Phobius | 289 | 306 | 18 | – | – | |
| Phobius | 307 | 317 | 11 | – | – | |
| Phobius | 318 | 338 | 21 | – | – | |
| TMHMM | 319 | 338 | 20 | – | – | |
| Phobius | 339 | 357 | 19 | – | – | |
| Phobius | 358 | 379 | 22 | – | – | |
| TMHMM | 358 | 380 | 23 | – | – | |
| Phobius | 380 | 439 | 60 | – | – | |
| PANTHER | 401 | 754 | 354 | 0 | – | |
| PANTHER | 401 | 754 | 354 | 0 | – | |
| PRINTS | 409 | 425 | 17 | 9.10E-17 | ||
| Gene3D | 414 | 566 | 153 | 5.90E-124 | ||
| SUPERFAMILY | 414 | 562 | 149 | 3.79E-100 | ||
| Phobius | 440 | 469 | 30 | – | – | |
| TMHMM | 442 | 464 | 23 | – | – | |
| PRINTS | 459 | 479 | 21 | 3.60E-63 | ||
| Phobius | 470 | 480 | 11 | – | – | |
| TMHMM | 477 | 499 | 23 | – | – | |
| Phobius | 481 | 502 | 22 | – | – | |
| PRINTS | 491 | 507 | 17 | 3.60E-63 | ||
| Phobius | 503 | 507 | 5 | – | – | |
| Phobius | 508 | 535 | 28 | – | – | |
| PRINTS | 509 | 528 | 20 | 3.60E-63 | ||
| TMHMM | 514 | 536 | 23 | – | – | |
| Phobius | 536 | 754 | 219 | – | – | |
| PRINTS | 547 | 561 | 15 | 3.60E-63 | ||
| SUPERFAMILY | 563 | 740 | 178 | 1.18E-24 | – | |
| ProSiteProfiles | 568 | 638 | 71 | 8.698 | ||
| Gene3D | 568 | 637 | 70 | 4.50E-13 | – | |
| SMART | 580 | 633 | 54 | 0.16 | ||
| CDD | 583 | 741 | 159 | 1.25E-18 | – | |
| Gene3D | 677 | 740 | 64 | 4.50E-13 | – | |
| ProSiteProfiles | 688 | 749 | 62 | 9.683 | ||
| Pfam | 690 | 739 | 50 | 1.30E-04 | ||
| SMART | 692 | 744 | 53 | 0.46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Voltage-gated chloride channel activity | Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Chloride transport | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj6g3v2006990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2006990.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.