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Lj6g3v2193660.1

Overview

Field Value
Gene ID Lj6g3v2193660
Transcript ID Lj6g3v2193660.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] gi|356525850|ref|XP_003531534.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 35 35 – –
PANTHER
PTHR23127
1 462 462 0
IPR004802
SMART
SM01136
48 106 59 4.50E-33
IPR012960
SUPERFAMILY
SSF55120
49 294 246 5.28E-77
IPR020103
Pfam
PF08068
49 106 58 1.90E-30
IPR012960
TIGRFAM
TIGR00425
56 381 326 2.30E-160
IPR004802
CDD
cd02572
88 270 183 6.78E-133 –
Pfam
PF01509
110 226 117 2.70E-19
IPR002501
Pfam
PF16198
227 293 67 1.30E-21
IPR032819
TIGRFAM
TIGR00451
291 368 78 4.40E-09
IPR004521
Gene3D
G3DSA:2.30.130.10
295 378 84 1.40E-29
IPR015947
SUPERFAMILY
SSF88697
296 377 82 1.55E-23
IPR015947
ProSiteProfiles
PS50890
296 371 76 19.222
IPR002478
SMART
SM00359
297 371 75 1.80E-24
IPR002478
Pfam
PF01472
297 369 73 1.00E-21
IPR002478
MobiDBLite
mobidb-lite
434 580 147 – –
PANTHER
PTHR23127
486 508 23 0
IPR004802
Coils
Coil
488 508 21 – –
PANTHER
PTHR23127
525 558 34 0
IPR004802

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj6g3v2193660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2193660.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.