Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v2218190.2

Overview

Field Value
Gene ID Lj6g3v2218190
Transcript ID Lj6g3v2218190.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356525874|ref|XP_003531546.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 15 15 – –
Phobius
TRANSMEMBRANE
16 33 18 – –
PANTHER
PTHR11895:SF92
18 475 458 5.20E-271 –
PANTHER
PTHR11895
18 475 458 5.20E-271
IPR000120
Phobius
CYTOPLASMIC_DOMAIN
34 608 575 – –
Gene3D
G3DSA:3.90.1300.10
70 463 394 2.00E-80
IPR023631
Pfam
PF01425
71 225 155 1.50E-50
IPR023631
SUPERFAMILY
SSF75304
73 293 221 2.22E-78
IPR023631
SUPERFAMILY
SSF75304
321 461 141 2.22E-78
IPR023631
Gene3D
G3DSA:1.25.40.10
490 596 107 1.00E-31
IPR011990
SUPERFAMILY
SSF48452
492 596 105 1.05E-28
IPR011990
ProSiteProfiles
PS50005
492 525 34 7.287
IPR019734
SMART
SM00028
492 525 34 0.01
IPR019734
ProSiteProfiles
PS50293
492 593 102 22.196
IPR013026
SMART
SM00028
526 559 34 0.0038
IPR019734
ProSiteProfiles
PS50005
526 559 34 6.667
IPR019734
Pfam
PF13181
526 553 28 0.014
IPR019734
ProSiteProfiles
PS50005
560 593 34 11.535
IPR019734
SMART
SM00028
560 593 34 4.50E-04
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004040
Molecular function Amidase activity Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj6g3v2218190.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2218190.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.