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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0001000 |
| Transcript ID | LotjaGi1g1v0001000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate receptor; TAIR: AT4G35290.1 glutamate receptor 2; Swiss-Prot: sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2; TrEMBL-Plants: tr|I1M634|I1M634_SOYBN Glutamate receptor; Found in the gene: LotjaGi1g1v0001000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:393196..397770) extracted from Lotus japonicus Gifu genome v1.2.
CACACGTTGAAAATGAGATAAATGGAAGCGTGTTGCGAATCAGGGTATGCAGTTCAAAGTCCAAAATGGACACCGAGTTG AGTTGTCACTTTGCACTCGACTTGACACATACTTACCACTCACTGTGGTGGTGGTGGAGTGGAGTGGAGGTGGTCCTCCC AGTCTAATTATAGTTCTGAACCCTACTCCACTCAACTCAACTCCGGGTTTGTGCTCTCATTGTCTCCCGCTAGTTAATTA AAATCCCATCTTCTATTCTGTTCACTTCACCAATCACCACACCACACACATTCCATGCCTTCATCTCTTTTCTTTCTTCC CTGCTTCAATTGAATTTATTATAACATTCACAAACCAAACCAAAACGCATCGTACATTACAACTGCAGTCTGCATGCAGC AGCAGCTAGTCTATCACGACCACCACGGGTTCCGGTTCTGGATGAATCTGCTGAGCTTGTGCCTGTGCCTGTGCCTGTGC CTTGCATTGCACAGAGCACCAGGGGAAGGAGCTTCCAGACATGACAACGTCGTCGTCAATGTCGGTGCCATATTCACTCT GAAGACTATAAACGGAAAAGTCTCCAAGATTGCCATCGAAGCTGCACAGAAAGATGTCAATTCCGATCCTCGCATCTTGG GTGGACGTAAACTTTCCATAACCATCCATGATTCTAACTTCAGTGGCTTTCTAGGCTTTATTGGGGGTATTCAAATTCAC TCACTTCCTTCTTTGTTTAACTTAATTGTATAAATTCTTATACTCCTTTACCTGGATCCTGCTATTCAATCACTTTGTTA ATTCATTCTTATTTAAACTTGACTGATAATAGCCCTCAGGTTCTTGATGACTGATACTGTAGCTATAATTGGTCCACAAA ATTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCAAGTTCCTCTGCTATCTTTCACGGCTTTGGATCCC ACCCTCACACCTCTTCAGTGTCCTTATTTTGTCCAAACTGCACCCAGTGACCTGTTTCAGATGACTGCAGTTGCTGACGT GATAAGTTATTTTGGTTGGAGGCAGGTCATTGCAGTTTATAGCGATGATGATCAGAGTCGAAACGGGGTAGCTGTCTTGG GGGACAAACTTGCTCTCAGACGCTGTCAATTGTCTTACAAAGCAGCACTGCCCCCGGATCCAACCGCCACTGCAGGTCAT GTTACTGATCAATTGCTCAAGATAAGAAGCATGGAAGCTCGAATAATTGTTGTGCACACCTACGCCATTACAGGTGCCTT GGTTTTCGACATGGCTCAAAAACTAGGGATGATGAGCAAAGGCTATGTCTGGATAGCTACTGCTTGGTTATCAACTGTTT TAGATTCAACTTCACCTTCATCGCTTCCTTTAAATACTTCTAACTCAATTCAAGGCGTTCTTACACTTCGCCCTCACACC CCTCAGTCAAGAAAGAAGCAGGCATTTATCTCGAGGTGGAACCACATAAGTAATGGCTCAATTGGGTTAAATCCATATGG CCTGTATGCTTATGATTCTGTTTGGATGATTGCTCATGCATTAAAATTATTTTTTGATCAGAATCAAACCATTTCCTTCT CTAATAATACAAATTTAAGTGGCACCAGGGAAGAGACTACTCTGAATCTTGGTGCTCTGCACGTTTTTGATGGAGGGAAA CAGTTACTTGATAACATATTGCGCATTAATATGACTGGGTTGACAGGACCTATTCAATTTGTTTCAGACAGATCTCCTTT ACATCCATCATATGACATCCTTAATGTACTTGCTACTGGTTATAGGAGAATTGGATACTGGTCTAATTATTCAGGGCTCT CTGTAATATCCCCTGAGAAACTTCACACTAAGCCTGCCAATCGTTCAATTTCGAACCAGCGTCTACACCGTGTCATATGG CCTGGAAATACAACAGAAAAGCCTCGTGGGTGGGTTTTCCCAAATAATGGAAGGCAACTCAGAATTGGAGTTCCCAACAG AGTTAGTTATGGGGACATGGTGTCACAAACAAATGGCACCACTGCAGTTCAAGGATATTGCATAGATATATTCTTGGCCG CCATAAAATTGCTCCCATATGCATTTCAATATAAGTTTGTTCTGTTTGGAGATGGACATAAGAACCCGAGCTACTATGAT CTTGTCAATATGATTACTTCTGATGTCAGTAATACTCAGAAATTATAATCCCTTTAATTAATAAAGTTATGATCACTGTA TTGCTTTTACTGATGGTATGTCACTTGCATTTACAGTCTTTTGATGCTGTTGTGGGTGACATTGCTATTGTCACTAGCCG GACAAAGATTGTGGATTTTACTCAACCATTTATAGAGTCAGGTTTAGTTGTGGTTGCTCCGGTGAAAAAGTTGAAGACAA GTGCTTGGGCTTTCTTGAGACCGTTTACTCCACAGATGTGGGGTGTCACTGCACTTTTTCTCCTTCTTGTTGGAATAGTG GTGTGGATTCTTGAACACAGAACAAATGATGAGTTTCGGGGGCCTCCAAAGAAACAGATGGTTACGATTCTTTGGTAAGT CTTTTCTTATTGTTACATTTGTTCTCATCAGCCAGTATGACAATATGTACTTAAAAGTGTCATGCAAAGTAATATTATTC AAGAGAACTTGTCCAGTGTATTTCTGGAGCAGCCCAAGTAACTTGTATAACTACTTATCATAGAACCTGATTTACATTCA ATCTTGTTATATAACGATGAGATGACAATCAAGTCAAGTTTACTTCCCTTCTTTGACTCTGGTAGCTACTGTACATAGCC CAACATTAACTCATCATTTTTGTATGAGATTGCAGGTTTAGTTTCTCAACCATGTTCTTTGCGCATAGTAAGTCCACAGT TCATGTCATATGATAGGTACTTAGCGAGTTAGTTAGTAGGGCCTACTAACTAACTCCCTAAGTACCTATCATAATATTTA TAAAACATACCATAAAGTGTATCCTGGTAAGTAACTAGACAGAAACCAGATTTCTCATTGTTTCAGGAGAAAACACAGTT AGTACACTTGGTCGTGTTGTGTTGATAATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACAGCAAGCTTGAC ATCAATTCTGACTGTGCAACAGCTGTCCTCGCCCATAACAGGAATTGACACTTTGATATCCAGCAACCTACGTGTAGGGT TCCAAGTAGGATCATTTGCTGAAAATTACCTGAACGAGGAACTCAACATTGCAAAACATAGACTCGTTCCACTTGGCTCA CCAGAAGAATATGTTATTGCTCTTGAGAAGGGAATCGTTGCAGCAGTGGTAGATGAACGACCCTATGTTGAACTCTTCCT GTCAAACCACTGCAAATTCTCAATTAGGGGCCAAGAGTTCACCAAAGGTGGATGGGGATTTGTGAGTATCTTTAATTTAC TCAAAATTACTTGAATGCAGCTTTCTTAGGATGGAGAATCTAGGAATATACCAGGGCACAAATTGCCAGTGCAGAAAAAC AAAACATTACAGTAGGTGTGTATGGGACGTCAAATATCACAAGTTGAGTTGAATTTTCAATAAAGAAAACTGTCATGCTA GTTTATTTGAAACACTAGATACTATTTTGATCGTTCAATACTTCCTCAACTGCAATTTGTGTGTACATATAAAACATTAT GTTACTTGTTGTCATCATTAATTGATGAAGTTCATAATTTTTAGTTGAAGCTAGGCCCCTTAATTTCTTGAGTTTCTTTT CTTGGCAGGCATTTCCGAGGGATTCTCCTTTAGCAATTGATATGTCAACTGCCATTCTGAGTCTATCTGAGAATGGTGAA CTTAGGAGGATCCGTGAAAAGTGGCTTTCGGAAAAGGCTTGTGGTTTTCGTAATAATGAGGATGAGCAGCTTCAATTACA TAGCTTTCGGGGCTTGTTTCTGATCTGTGGCATAACATGTTTCCTGGCGCTTCTTATCTACTTCTTTTCAATAGTACGCC AATTCAGTCAAAACACTCCTCACAAAGACAGATCACGCATCCAGACTTTTCTAAATTTTGTTGATGAAAAAGAAGACATA TCACACAACCAATTAAAAAGAAAAGTTGAGGATATTTCATCAGATGCTTATTCCAGAGAAAGTCATTTGAGGAGCATAGA TCAGAGGGCACAAATGGATAAATCCCAAGAGGCTCCTTTGGCTTGACTCAGTTATATATAGGTTGTTCTTGTTGAAATTT AAATCTAAGTCGTTAAGTGATAGCATTGTTGTTGTGATATCAGGTGGGATTTATTTACTCCACGAGTAAGTCAAAAAACT TACTCCAAATCTTAGCCATCAATTTAATTAAAAACAAACGGTTGAGATTTTAATTTAAAACCAATCACGTGCCTCACTTC ACGTTTATTCTTTGTCTGAACCTTCCCTGTTCTCTCATTTTCCCGTTCTTTTCCGTCTTCCTCGTTCTTGTTTCTCCTCC ATTTTTTCCTCTTTCTTTGCCACTGATTTAAACACTGAACCGAACACGCATATGGCAATATTTACTTGATTGTCACCTGT ATACTGCATATAATC
CDS sequence (LotjaGi1g1v0001000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAGCAGCTAGTCTATCACGACCACCACGGGTTCCGGTTCTGGATGAATCTGCTGAGCTTGTGCCTGTGCCTGTG CCTGTGCCTTGCATTGCACAGAGCACCAGGGGAAGGAGCTTCCAGACATGACAACGTCGTCGTCAATGTCGGTGCCATAT TCACTCTGAAGACTATAAACGGAAAAGTCTCCAAGATTGCCATCGAAGCTGCACAGAAAGATGTCAATTCCGATCCTCGC ATCTTGGGTGGACGTAAACTTTCCATAACCATCCATGATTCTAACTTCAGTGGCTTTCTAGGCTTTATTGGGGCCCTCAG GTTCTTGATGACTGATACTGTAGCTATAATTGGTCCACAAAATTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATG AGCTCCAAGTTCCTCTGCTATCTTTCACGGCTTTGGATCCCACCCTCACACCTCTTCAGTGTCCTTATTTTGTCCAAACT GCACCCAGTGACCTGTTTCAGATGACTGCAGTTGCTGACGTGATAAGTTATTTTGGTTGGAGGCAGGTCATTGCAGTTTA TAGCGATGATGATCAGAGTCGAAACGGGGTAGCTGTCTTGGGGGACAAACTTGCTCTCAGACGCTGTCAATTGTCTTACA AAGCAGCACTGCCCCCGGATCCAACCGCCACTGCAGGTCATGTTACTGATCAATTGCTCAAGATAAGAAGCATGGAAGCT CGAATAATTGTTGTGCACACCTACGCCATTACAGGTGCCTTGGTTTTCGACATGGCTCAAAAACTAGGGATGATGAGCAA AGGCTATGTCTGGATAGCTACTGCTTGGTTATCAACTGTTTTAGATTCAACTTCACCTTCATCGCTTCCTTTAAATACTT CTAACTCAATTCAAGGCGTTCTTACACTTCGCCCTCACACCCCTCAGTCAAGAAAGAAGCAGGCATTTATCTCGAGGTGG AACCACATAAGTAATGGCTCAATTGGGTTAAATCCATATGGCCTGTATGCTTATGATTCTGTTTGGATGATTGCTCATGC ATTAAAATTATTTTTTGATCAGAATCAAACCATTTCCTTCTCTAATAATACAAATTTAAGTGGCACCAGGGAAGAGACTA CTCTGAATCTTGGTGCTCTGCACGTTTTTGATGGAGGGAAACAGTTACTTGATAACATATTGCGCATTAATATGACTGGG TTGACAGGACCTATTCAATTTGTTTCAGACAGATCTCCTTTACATCCATCATATGACATCCTTAATGTACTTGCTACTGG TTATAGGAGAATTGGATACTGGTCTAATTATTCAGGGCTCTCTGTAATATCCCCTGAGAAACTTCACACTAAGCCTGCCA ATCGTTCAATTTCGAACCAGCGTCTACACCGTGTCATATGGCCTGGAAATACAACAGAAAAGCCTCGTGGGTGGGTTTTC CCAAATAATGGAAGGCAACTCAGAATTGGAGTTCCCAACAGAGTTAGTTATGGGGACATGGTGTCACAAACAAATGGCAC CACTGCAGTTCAAGGATATTGCATAGATATATTCTTGGCCGCCATAAAATTGCTCCCATATGCATTTCAATATAAGTTTG TTCTGTTTGGAGATGGACATAAGAACCCGAGCTACTATGATCTTGTCAATATGATTACTTCTGATTCTTTTGATGCTGTT GTGGGTGACATTGCTATTGTCACTAGCCGGACAAAGATTGTGGATTTTACTCAACCATTTATAGAGTCAGGTTTAGTTGT GGTTGCTCCGGTGAAAAAGTTGAAGACAAGTGCTTGGGCTTTCTTGAGACCGTTTACTCCACAGATGTGGGGTGTCACTG CACTTTTTCTCCTTCTTGTTGGAATAGTGGTGTGGATTCTTGAACACAGAACAAATGATGAGTTTCGGGGGCCTCCAAAG AAACAGATGGTTACGATTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCATAGAGAAAACACAGTTAGTACACTTGG TCGTGTTGTGTTGATAATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACAGCAAGCTTGACATCAATTCTGA CTGTGCAACAGCTGTCCTCGCCCATAACAGGAATTGACACTTTGATATCCAGCAACCTACGTGTAGGGTTCCAAGTAGGA TCATTTGCTGAAAATTACCTGAACGAGGAACTCAACATTGCAAAACATAGACTCGTTCCACTTGGCTCACCAGAAGAATA TGTTATTGCTCTTGAGAAGGGAATCGTTGCAGCAGTGGTAGATGAACGACCCTATGTTGAACTCTTCCTGTCAAACCACT GCAAATTCTCAATTAGGGGCCAAGAGTTCACCAAAGGTGGATGGGGATTTGCATTTCCGAGGGATTCTCCTTTAGCAATT GATATGTCAACTGCCATTCTGAGTCTATCTGAGAATGGTGAACTTAGGAGGATCCGTGAAAAGTGGCTTTCGGAAAAGGC TTGTGGTTTTCGTAATAATGAGGATGAGCAGCTTCAATTACATAGCTTTCGGGGCTTGTTTCTGATCTGTGGCATAACAT GTTTCCTGGCGCTTCTTATCTACTTCTTTTCAATAGTACGCCAATTCAGTCAAAACACTCCTCACAAAGACAGATCACGC ATCCAGACTTTTCTAAATTTTGTTGATGAAAAAGAAGACATATCACACAACCAATTAAAAAGAAAAGTTGAGGATATTTC ATCAGATGCTTATTCCAGAGAAAGTCATTTGAGGAGCATAGATCAGAGGGCACAAATGGATAAATCCCAAGAGGCTCCTT TGGCTTGA
Protein sequence (LotjaGi1g1v0001000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQQLVYHDHHGFRFWMNLLSLCLCLCLCLALHRAPGEGASRHDNVVVNVGAIFTLKTINGKVSKIAIEAAQKDVNSDPR ILGGRKLSITIHDSNFSGFLGFIGALRFLMTDTVAIIGPQNSVMAHVLSHLANELQVPLLSFTALDPTLTPLQCPYFVQT APSDLFQMTAVADVISYFGWRQVIAVYSDDDQSRNGVAVLGDKLALRRCQLSYKAALPPDPTATAGHVTDQLLKIRSMEA RIIVVHTYAITGALVFDMAQKLGMMSKGYVWIATAWLSTVLDSTSPSSLPLNTSNSIQGVLTLRPHTPQSRKKQAFISRW NHISNGSIGLNPYGLYAYDSVWMIAHALKLFFDQNQTISFSNNTNLSGTREETTLNLGALHVFDGGKQLLDNILRINMTG LTGPIQFVSDRSPLHPSYDILNVLATGYRRIGYWSNYSGLSVISPEKLHTKPANRSISNQRLHRVIWPGNTTEKPRGWVF PNNGRQLRIGVPNRVSYGDMVSQTNGTTAVQGYCIDIFLAAIKLLPYAFQYKFVLFGDGHKNPSYYDLVNMITSDSFDAV VGDIAIVTSRTKIVDFTQPFIESGLVVVAPVKKLKTSAWAFLRPFTPQMWGVTALFLLLVGIVVWILEHRTNDEFRGPPK KQMVTILWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDTLISSNLRVGFQVG SFAENYLNEELNIAKHRLVPLGSPEEYVIALEKGIVAAVVDERPYVELFLSNHCKFSIRGQEFTKGGWGFAFPRDSPLAI DMSTAILSLSENGELRRIREKWLSEKACGFRNNEDEQLQLHSFRGLFLICGITCFLALLIYFFSIVRQFSQNTPHKDRSR IQTFLNFVDEKEDISHNQLKRKVEDISSDAYSRESHLRSIDQRAQMDKSQEAPLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| PIRSF | 14 | 934 | 921 | 0.0 | ||
| TMHMM | 15 | 32 | 18 | - | – | |
| Phobius | 19 | 30 | 12 | - | – | |
| Phobius | 31 | 34 | 4 | - | – | |
| Phobius | 35 | 608 | 574 | - | – | |
| PANTHER | 39 | 909 | 871 | 0.0 | – | |
| PANTHER | 39 | 909 | 871 | 0.0 | – | |
| SUPERFAMILY | 47 | 479 | 433 | 5.05E-78 | ||
| CDD | 49 | 443 | 395 | 2.45227E-116 | – | |
| Gene3D | 66 | 416 | 351 | 2.4E-82 | – | |
| Pfam | 66 | 423 | 358 | 1.7E-76 | ||
| Gene3D | 163 | 440 | 278 | 2.4E-82 | – | |
| TMHMM | 242 | 259 | 18 | - | – | |
| SUPERFAMILY | 465 | 825 | 361 | 6.19E-49 | – | |
| CDD | 485 | 823 | 339 | 1.88035E-86 | – | |
| SMART | 488 | 825 | 338 | 1.3E-55 | ||
| Pfam | 507 | 824 | 318 | 7.9E-22 | ||
| Gene3D | 510 | 836 | 327 | 7.3E-81 | – | |
| Gene3D | 584 | 788 | 205 | 7.3E-81 | – | |
| Gene3D | 594 | 862 | 269 | 7.3E-81 | – | |
| TMHMM | 605 | 627 | 23 | - | – | |
| Phobius | 609 | 627 | 19 | - | – | |
| Phobius | 628 | 638 | 11 | - | – | |
| Phobius | 639 | 657 | 19 | - | – | |
| Phobius | 658 | 668 | 11 | - | – | |
| TMHMM | 666 | 688 | 23 | - | – | |
| Phobius | 669 | 693 | 25 | - | – | |
| Phobius | 694 | 845 | 152 | - | – | |
| Pfam | 825 | 853 | 29 | 5.8E-35 | ||
| TMHMM | 844 | 866 | 23 | - | – | |
| Phobius | 846 | 866 | 21 | - | – | |
| Phobius | 867 | 935 | 69 | - | – | |
| MobiDBLite | 907 | 925 | 19 | - | – | |
| MobiDBLite | 907 | 935 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0001000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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