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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0017500 |
Transcript ID | LotjaGi1g1v0017500.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G06920.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920; TrEMBL-Plants: tr|V7BC04|V7BC04_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0017500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2190158..2194506) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATTGGAACCATAATCAAATCAAAAGGGCCTCCTCCACCTTCTTCTACTCTGCTGGTCTACTCTGTCTCTGCCTCT GTGTATCTGCATATCCTCTCATTTTTATCTGTTAATCCTGTCATGTCTAACATGAAGATTCTCTCAAGGGTCCAAGGTTT CTCTTTTTTGTCTTTCATTCTTAAAAAATTTCATTTTGTCTCTGTTGATTCTGTTTCTTCTTATTCTCGTTTCAGGGTTA CCATCTGAAATCTGATTAATTTTCTTCTTGTTGCAGTTCTGAAGTTTCGGTTTGTTCTCCAATCTGGGAAAATTGACCCT TTATCCAAGAGGTTCTTATGCTCATCATCATCTTCGTCTTCATCTTCAAATGGGTCTCATTTTTCTCCTTCTTCTGAGAA AAAAGTTAACCCATTTATCGATACCCACCATGACAATGCAACAAAATCTGAGAGTGCGAGGAAGACTGTGCTTGATATAT GCCGGGTTTTGGAAACTGGTCCTTGGGGACCTTCCATCGAGGATGCTCTCAACTTGTTTGATGAAATGCCTCAACCGGAA TTCGTTGTTGGAGTGATGAGGAGGTTGAAGGATGTGAATGTGGCATTGCAGTATTTTAGATGGGTGGAGGGTAAAGCTGA ACAAGTGCATTGCCCAGAAGTTTACAATGCTCTTCTCATGGTTATGGCTAGGACTAGAAACTTGGATTACTTGGAACAGA TTCTTGAAGAAATGAGTCTGGCTGGATTTGGACCCTCTAGTACTACTTGTATTGAGCTGGTTACGAGTTTTGTCAAGTCG CGGAAGCTAAGAGAAGCTTTTGGAGTCATTGAAACGATGAGGAAGTTCAAGTTTCGCCCTGCTTTTTCAGCTTACACCAC ACTGATTGGTGCCCTCTCTGCATCTAATGAAGCTGATCTCATGCTCAATCTCTTTCATCAAATGCAGGAAATGGGTTATG AAGTGAGCATACATTTGTTTACCACGCTTGTTCGCTCAATTGCCAGGCTGGGCCGCATGGATGCTGCTCTTTCCTTGCTG GATGAGATGAAGAGTAACTCATTTAGTGCAGATCTTGTCCTTTACAATGTATGCATAGACTGTTTTGGTAAAGTTGGTAA GGTGGATATGGCTTGGAAATTCTTTCATGAGATGAAAGCACAAGGGTTGGTGCCTGATGATGTGACATATACTAGCATGA TAGGAGTTCTTTGCAAGGCTGAGAGGGTAGATGAAGCTGTTGAGCTGTTTGAAGAACTGGATCTCAACAGGAGTGTCCCT TGTGTTTATGCTTATAATACCATGATTATGGGTTATGGTTCAGTTGGGAAATTTGATGAAGCATACAACTTACTTGAGAG ACAAAAGAGAAAGGGATGTATACCTAGTGTGATAGCATATAACTGCATTCTGACTTGCCTAAGAAGGAAGGGCAATGTAG AGGAAGCGTTGAGGATATTTGAAGAAATGAAAAAAGATGCAGCACCCAATCTTACAACCTACAATATTTTAATTGACATG CTTTGTAATGCAGGAAATCTCGAAGCTGCTTTGAAAGTTCAAAACACCATGAAAGAGGCTGGCTTATTCCCTAATATTGT GACTGTAAATATAATGATTGATCGGCTATGTAAAGCTCAAAGACTTGATGAAGCTTGCTCCATATTTTTGGAATTGGATC ATGAAGTTTGTACCCCTGATGCAGTAACATTTTGCTCACTTATTAATGGCTTGGGAAGACATGGCAGGGTAAATGATGCC TATAAGCTTTATGAAAAGATGTTAGATTCCGATCAGCCTCCGAATGTAGTAGTATACACTTCACTTATTAGGACTTTTTT CAAGTGTGGTAGGAAGGAGGATGGTCACAAAATTTTCAGGGAGATGGTGGATAGGGGTTGTTCTCCTGATCTTATGCTCC TTAATACTTACATGGATTGTGTTTTCAAAGGTGGTGAAATTGAGAAAGGGAGGGCTTTATTTGAAGAAATAAAAGCTCGG GGGTTAGTTCCTGATGCTTGGAGCTACTCAATTTTAATTCATGGACTTGTGAAAGCAGGATGTTCAAAAGAAACATATAA GTTATTTTATGAGATGAAGGAACAAGGATTGCATTTGGACACGCGTGCATACAACGCTGTAATTGATGGATTCTGCAAGT CTGGTAAGGTCAACAAAGCCTACCAACTGTTGGAGGAAATGAAAACAAAGGGTCTTCAACCTACTGTTGTAACTTATGGT TCTGTCATTGATGGACTCGCTAAAATCGACAGGCTCGATGAAGCATACATGTTATTTGAAGAAGCAAAATCAATTGGTGT TGATTTGAATTTAGTTATCTACAGCAGTCTCATTGATGGGTTTGGGAAGGTGGGAAGAATTGACGAAGCATATTTGATAA TGGAGGAGTTGATGCAGAAAGGTCTGACTCCAAACACATACACATGGAGTTGCTTACTTGACGCGTTGGTGAAAGCAGAG GAAATCGATGAAGCTCTTGTCTGCTTTCAAAACATGAAAAACTTGAAATGTTCTCCGAATGATGTTACTTATGCCATTAT GATAAATGGCCTTTGCAAGATTAGAAAGTTTAACAAGGCCTTTGTGTTCTGGCAAGAGATGCAGAAACAAGGGTTAAAAC CCAACCCTATCACATACACCACCATGATTTCAGGATTGGCAAAGGCTGGAAATGTTAGAGAGGCAAGAGATCTATTTGAG AGATTTAAGGCCAGTGGGGGCGTGCCCGATTCTGCTTGTTATAACGCAATGATGGAAGGATTAAGCAATGCCAATAAAGC AATGGATGCTTATGCGCTTTTTGAAGAAACACGACGGAGAGGTTGTCGTATACACAGCAAAACATGTGTTGTTCTTTTAG ATGCATTGCATAAGGCTGAGTGCCTTGAGCAAGCAGCCATTGTTGGTGCTGTCTTAAGAGAAATGGCAAGGTCTCAACAT GCTACAAGATTATCTTGAGGACAGGTTGTACATAATGTATTGATGTTGGAATAAACCCCAGGCTTCTGGCTTATCTTTCC TCATAATCAATTCTGAAACCTAGAAGTTACTCATGCAAACTTCTCTCCTAAATTGGTTTTGGCGTTAGATAGAAAATTTT TCAAACATGCACTGAGTGGTGGTCTTCTTTGTAAATCCTTGCCTTCCCCTTGTCTGATCAAGCAACTTGTAAGACAAAGT GAGAGATTTCCAATGTCTCCAGATGTTTGATAAGGTTCATGAATCATGACTAGCCACAAAGGTCATTTATATGAAGGATT TAATTTATGACAGTGACAAGAGTTTTACATAGACATCCAATCATATCTTGCCATGTTTCTATTTTGGTATGTTCTTATTT TAATTCATTCATGATGTAGCAAAATAGTAAGTCGTAATTGAATGTCTCTGTAAAATGTCAGGTTCCAGAATATTTGGCAG CTTCATGCAAATTAGTCTTGAAAGTGTTATGCTACTCTTTTTTTAACCCTTAAAAGTTCTGTGGGTTTCAGACGGATTGT TTCATGCCTAACGGTTTTCCTGGAAAAAGTACTTATAACTGCATTCATATATCGGTTTTTCATGTTTGCCATTTCTTTAT TTTTGTTTTATGTACTTTATTTTTGGTAGAATTGTAATATGGTGTAATGTATTGATTACTGGATCTGCAAGCACTATATT GTATGGCAAAAACTTAAGATATTTTATAAGAATGCATGGCCTGGATACTTGGTTCATAACTTCATATGCATAAGCCACCT TTGTAACTTTTGTAGGTGCAAAAGTGTGCTGAAGATAGAAGTGTGTTGATCACAACATATGTTGGCCAGCATAGCCATCC TCTGCCTCCAACTGCACAAGCAATGGCATCAACCACATCTGCAGCAGCCTCGATACTTCTCTTAGGATCAATGCCAAGTG CAGATCATGGCCTCATTAATCCAACCATATTAGAAACTGCTTCACTCTCAGCCTCAGCACCAATTCCAACTAGCATTCTT GATCTCACTCAAACTTATGCATAAAGACTTGGTGATTTGTTGGTGTCACTATTTTGTTTGGAAATACGTGTCGTTCTTAT ACTTAGGTGTGTCGATATTGATTTTAATTTATTCAGTGTCATACACCTGAAGGATCTTATATTGATTGAATTTCTAAATA TTTTATATTTTATTTGAGCGTAGCTACATTCTCAAACGATCTTCTTCCATCACACTCTCATTCATTGGCTAAAATTCATA TGGATCACACTAATTTTGAAGTGAGATCCACATTAATTTTACCTAATGGATTAGAGAGTGTTGAATTGAAAAGAGAGTGT ACGTAGCATTATTTATTTTATAATTTTTT
CDS sequence (LotjaGi1g1v0017500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAACATGAAGATTCTCTCAAGGGTCCAAGTTCTGAAGTTTCGGTTTGTTCTCCAATCTGGGAAAATTGACCCTTT ATCCAAGAGGTTCTTATGCTCATCATCATCTTCGTCTTCATCTTCAAATGGGTCTCATTTTTCTCCTTCTTCTGAGAAAA AAGTTAACCCATTTATCGATACCCACCATGACAATGCAACAAAATCTGAGAGTGCGAGGAAGACTGTGCTTGATATATGC CGGGTTTTGGAAACTGGTCCTTGGGGACCTTCCATCGAGGATGCTCTCAACTTGTTTGATGAAATGCCTCAACCGGAATT CGTTGTTGGAGTGATGAGGAGGTTGAAGGATGTGAATGTGGCATTGCAGTATTTTAGATGGGTGGAGGGTAAAGCTGAAC AAGTGCATTGCCCAGAAGTTTACAATGCTCTTCTCATGGTTATGGCTAGGACTAGAAACTTGGATTACTTGGAACAGATT CTTGAAGAAATGAGTCTGGCTGGATTTGGACCCTCTAGTACTACTTGTATTGAGCTGGTTACGAGTTTTGTCAAGTCGCG GAAGCTAAGAGAAGCTTTTGGAGTCATTGAAACGATGAGGAAGTTCAAGTTTCGCCCTGCTTTTTCAGCTTACACCACAC TGATTGGTGCCCTCTCTGCATCTAATGAAGCTGATCTCATGCTCAATCTCTTTCATCAAATGCAGGAAATGGGTTATGAA GTGAGCATACATTTGTTTACCACGCTTGTTCGCTCAATTGCCAGGCTGGGCCGCATGGATGCTGCTCTTTCCTTGCTGGA TGAGATGAAGAGTAACTCATTTAGTGCAGATCTTGTCCTTTACAATGTATGCATAGACTGTTTTGGTAAAGTTGGTAAGG TGGATATGGCTTGGAAATTCTTTCATGAGATGAAAGCACAAGGGTTGGTGCCTGATGATGTGACATATACTAGCATGATA GGAGTTCTTTGCAAGGCTGAGAGGGTAGATGAAGCTGTTGAGCTGTTTGAAGAACTGGATCTCAACAGGAGTGTCCCTTG TGTTTATGCTTATAATACCATGATTATGGGTTATGGTTCAGTTGGGAAATTTGATGAAGCATACAACTTACTTGAGAGAC AAAAGAGAAAGGGATGTATACCTAGTGTGATAGCATATAACTGCATTCTGACTTGCCTAAGAAGGAAGGGCAATGTAGAG GAAGCGTTGAGGATATTTGAAGAAATGAAAAAAGATGCAGCACCCAATCTTACAACCTACAATATTTTAATTGACATGCT TTGTAATGCAGGAAATCTCGAAGCTGCTTTGAAAGTTCAAAACACCATGAAAGAGGCTGGCTTATTCCCTAATATTGTGA CTGTAAATATAATGATTGATCGGCTATGTAAAGCTCAAAGACTTGATGAAGCTTGCTCCATATTTTTGGAATTGGATCAT GAAGTTTGTACCCCTGATGCAGTAACATTTTGCTCACTTATTAATGGCTTGGGAAGACATGGCAGGGTAAATGATGCCTA TAAGCTTTATGAAAAGATGTTAGATTCCGATCAGCCTCCGAATGTAGTAGTATACACTTCACTTATTAGGACTTTTTTCA AGTGTGGTAGGAAGGAGGATGGTCACAAAATTTTCAGGGAGATGGTGGATAGGGGTTGTTCTCCTGATCTTATGCTCCTT AATACTTACATGGATTGTGTTTTCAAAGGTGGTGAAATTGAGAAAGGGAGGGCTTTATTTGAAGAAATAAAAGCTCGGGG GTTAGTTCCTGATGCTTGGAGCTACTCAATTTTAATTCATGGACTTGTGAAAGCAGGATGTTCAAAAGAAACATATAAGT TATTTTATGAGATGAAGGAACAAGGATTGCATTTGGACACGCGTGCATACAACGCTGTAATTGATGGATTCTGCAAGTCT GGTAAGGTCAACAAAGCCTACCAACTGTTGGAGGAAATGAAAACAAAGGGTCTTCAACCTACTGTTGTAACTTATGGTTC TGTCATTGATGGACTCGCTAAAATCGACAGGCTCGATGAAGCATACATGTTATTTGAAGAAGCAAAATCAATTGGTGTTG ATTTGAATTTAGTTATCTACAGCAGTCTCATTGATGGGTTTGGGAAGGTGGGAAGAATTGACGAAGCATATTTGATAATG GAGGAGTTGATGCAGAAAGGTCTGACTCCAAACACATACACATGGAGTTGCTTACTTGACGCGTTGGTGAAAGCAGAGGA AATCGATGAAGCTCTTGTCTGCTTTCAAAACATGAAAAACTTGAAATGTTCTCCGAATGATGTTACTTATGCCATTATGA TAAATGGCCTTTGCAAGATTAGAAAGTTTAACAAGGCCTTTGTGTTCTGGCAAGAGATGCAGAAACAAGGGTTAAAACCC AACCCTATCACATACACCACCATGATTTCAGGATTGGCAAAGGCTGGAAATGTTAGAGAGGCAAGAGATCTATTTGAGAG ATTTAAGGCCAGTGGGGGCGTGCCCGATTCTGCTTGTTATAACGCAATGATGGAAGGATTAAGCAATGCCAATAAAGCAA TGGATGCTTATGCGCTTTTTGAAGAAACACGACGGAGAGGTTGTCGTATACACAGCAAAACATGTGTTGTTCTTTTAGAT GCATTGCATAAGGCTGAGTGCCTTGAGCAAGCAGCCATTGTTGGTGCTGTCTTAAGAGAAATGGCAAGGTCTCAACATGC TACAAGATTATCTTGA
Protein sequence (LotjaGi1g1v0017500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNMKILSRVQVLKFRFVLQSGKIDPLSKRFLCSSSSSSSSSNGSHFSPSSEKKVNPFIDTHHDNATKSESARKTVLDIC RVLETGPWGPSIEDALNLFDEMPQPEFVVGVMRRLKDVNVALQYFRWVEGKAEQVHCPEVYNALLMVMARTRNLDYLEQI LEEMSLAGFGPSSTTCIELVTSFVKSRKLREAFGVIETMRKFKFRPAFSAYTTLIGALSASNEADLMLNLFHQMQEMGYE VSIHLFTTLVRSIARLGRMDAALSLLDEMKSNSFSADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTSMI GVLCKAERVDEAVELFEELDLNRSVPCVYAYNTMIMGYGSVGKFDEAYNLLERQKRKGCIPSVIAYNCILTCLRRKGNVE EALRIFEEMKKDAAPNLTTYNILIDMLCNAGNLEAALKVQNTMKEAGLFPNIVTVNIMIDRLCKAQRLDEACSIFLELDH EVCTPDAVTFCSLINGLGRHGRVNDAYKLYEKMLDSDQPPNVVVYTSLIRTFFKCGRKEDGHKIFREMVDRGCSPDLMLL NTYMDCVFKGGEIEKGRALFEEIKARGLVPDAWSYSILIHGLVKAGCSKETYKLFYEMKEQGLHLDTRAYNAVIDGFCKS GKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSIGVDLNLVIYSSLIDGFGKVGRIDEAYLIM EELMQKGLTPNTYTWSCLLDALVKAEEIDEALVCFQNMKNLKCSPNDVTYAIMINGLCKIRKFNKAFVFWQEMQKQGLKP NPITYTTMISGLAKAGNVREARDLFERFKASGGVPDSACYNAMMEGLSNANKAMDAYALFEETRRRGCRIHSKTCVVLLD ALHKAECLEQAAIVGAVLREMARSQHATRLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 36 | 69 | 34 | - | – | |
MobiDBLite | 36 | 55 | 20 | - | – | |
Gene3D | 106 | 224 | 119 | 7.2E-18 | ||
PANTHER | 135 | 270 | 136 | 4.3E-235 | – | |
PANTHER | 135 | 270 | 136 | 4.3E-235 | – | |
ProSiteProfiles | 137 | 171 | 35 | 8.583 | ||
Pfam | 160 | 218 | 59 | 5.3E-6 | ||
ProSiteProfiles | 172 | 206 | 35 | 8.912 | ||
ProSiteProfiles | 207 | 241 | 35 | 8.616 | ||
TIGRFAM | 210 | 242 | 33 | 2.3E-4 | ||
Gene3D | 225 | 342 | 118 | 2.0E-32 | ||
ProSiteProfiles | 242 | 276 | 35 | 9.986 | ||
TIGRFAM | 245 | 277 | 33 | 1.1E-5 | ||
Pfam | 246 | 273 | 28 | 5.4E-4 | ||
PANTHER | 265 | 530 | 266 | 4.3E-235 | – | |
PANTHER | 265 | 530 | 266 | 4.3E-235 | – | |
Pfam | 277 | 325 | 49 | 7.5E-16 | ||
ProSiteProfiles | 277 | 311 | 35 | 12.485 | ||
TIGRFAM | 279 | 312 | 34 | 3.9E-10 | ||
ProSiteProfiles | 312 | 346 | 35 | 11.389 | ||
TIGRFAM | 314 | 342 | 29 | 2.1E-6 | ||
Gene3D | 343 | 412 | 70 | 1.8E-17 | ||
ProSiteProfiles | 347 | 381 | 35 | 11.74 | ||
TIGRFAM | 349 | 382 | 34 | 9.1E-7 | ||
Pfam | 377 | 410 | 34 | 1.0E-6 | ||
SUPERFAMILY | 381 | 827 | 447 | 9.48E-10 | ||
ProSiteProfiles | 382 | 412 | 31 | 10.534 | ||
TIGRFAM | 385 | 411 | 27 | 1.0E-6 | ||
Gene3D | 413 | 479 | 67 | 2.3E-19 | ||
Pfam | 415 | 464 | 50 | 2.0E-15 | ||
ProSiteProfiles | 416 | 450 | 35 | 12.288 | ||
TIGRFAM | 419 | 452 | 34 | 2.7E-8 | ||
ProSiteProfiles | 451 | 485 | 35 | 9.964 | ||
TIGRFAM | 453 | 487 | 35 | 5.4E-6 | ||
PANTHER | 458 | 557 | 100 | 4.3E-235 | – | |
PANTHER | 458 | 557 | 100 | 4.3E-235 | – | |
Gene3D | 480 | 569 | 90 | 1.9E-25 | ||
Pfam | 483 | 513 | 31 | 2.5E-10 | ||
ProSiteProfiles | 486 | 520 | 35 | 12.266 | ||
TIGRFAM | 488 | 522 | 35 | 6.7E-8 | ||
ProSiteProfiles | 521 | 555 | 35 | 12.77 | ||
TIGRFAM | 523 | 556 | 34 | 2.1E-8 | ||
Pfam | 523 | 553 | 31 | 3.9E-5 | ||
PANTHER | 532 | 898 | 367 | 4.3E-235 | – | |
PANTHER | 532 | 898 | 367 | 4.3E-235 | – | |
Pfam | 555 | 604 | 50 | 2.7E-9 | ||
ProSiteProfiles | 556 | 590 | 35 | 9.58 | ||
TIGRFAM | 561 | 592 | 32 | 5.6E-5 | ||
Gene3D | 570 | 675 | 106 | 4.1E-33 | ||
ProSiteProfiles | 591 | 625 | 35 | 10.863 | ||
TIGRFAM | 594 | 626 | 33 | 4.6E-7 | ||
ProSiteProfiles | 626 | 660 | 35 | 14.359 | ||
Pfam | 626 | 674 | 49 | 1.8E-17 | ||
TIGRFAM | 629 | 661 | 33 | 6.0E-10 | ||
ProSiteProfiles | 661 | 695 | 35 | 10.26 | ||
TIGRFAM | 663 | 689 | 27 | 8.6E-4 | ||
Gene3D | 676 | 783 | 108 | 3.8E-31 | ||
ProSiteProfiles | 696 | 730 | 35 | 12.255 | ||
Pfam | 696 | 744 | 49 | 1.2E-10 | ||
TIGRFAM | 698 | 732 | 35 | 4.9E-7 | ||
ProSiteProfiles | 731 | 765 | 35 | 10.95 | ||
TIGRFAM | 733 | 766 | 34 | 1.0E-7 | ||
ProSiteProfiles | 766 | 800 | 35 | 12.693 | ||
TIGRFAM | 768 | 801 | 34 | 2.4E-10 | ||
Pfam | 768 | 814 | 47 | 3.5E-17 | ||
Gene3D | 784 | 910 | 127 | 1.9E-29 | ||
ProSiteProfiles | 801 | 835 | 35 | 12.562 | ||
TIGRFAM | 803 | 836 | 34 | 2.7E-9 | ||
Pfam | 835 | 884 | 50 | 2.5E-8 | ||
ProSiteProfiles | 836 | 870 | 35 | 10.369 | ||
TIGRFAM | 839 | 869 | 31 | 3.9E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0017500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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