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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0017500 |
| Transcript ID | LotjaGi1g1v0017500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G06920.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920; TrEMBL-Plants: tr|V7BC04|V7BC04_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0017500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2190175..2194395) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAATCAAAAGGGCCTCCTCCACCTTCTTCTACTCTGCTGGTCTACTCTGTCTCTGCCTCTGTGTATCTGCATATCCT CTCATTTTTATCTGTTAATCCTGTCATGTCTAACATGAAGATTCTCTCAAGGGTCCAAGGTTTCTCTTTTTTGTCTTTCA TTCTTAAAAAATTTCATTTTGTCTCTGTTGATTCTGTTTCTTCTTATTCTCGTTTCAGGGTTACCATCTGAAATCTGATT AATTTTCTTCTTGTTGCAGTTCTGAAGTTTCGGTTTGTTCTCCAATCTGGGAAAATTGACCCTTTATCCAAGAGGTTCTT ATGCTCATCATCATCTTCGTCTTCATCTTCAAATGGGTCTCATTTTTCTCCTTCTTCTGAGAAAAAAGTTAACCCATTTA TCGATACCCACCATGACAATGCAACAAAATCTGAGAGTGCGAGGAAGACTGTGCTTGATATATGCCGGGTTTTGGAAACT GGTCCTTGGGGACCTTCCATCGAGGATGCTCTCAACTTGTTTGATGAAATGCCTCAACCGGAATTCGTTGTTGGAGTGAT GAGGAGGTTGAAGGATGTGAATGTGGCATTGCAGTATTTTAGATGGGTGGAGGGTAAAGCTGAACAAGTGCATTGCCCAG AAGTTTACAATGCTCTTCTCATGGTTATGGCTAGGACTAGAAACTTGGATTACTTGGAACAGATTCTTGAAGAAATGAGT CTGGCTGGATTTGGACCCTCTAGTACTACTTGTATTGAGCTGGTTACGAGTTTTGTCAAGTCGCGGAAGCTAAGAGAAGC TTTTGGAGTCATTGAAACGATGAGGAAGTTCAAGTTTCGCCCTGCTTTTTCAGCTTACACCACACTGATTGGTGCCCTCT CTGCATCTAATGAAGCTGATCTCATGCTCAATCTCTTTCATCAAATGCAGGAAATGGGTTATGAAGTGAGCATACATTTG TTTACCACGCTTGTTCGCTCAATTGCCAGGCTGGGCCGCATGGATGCTGCTCTTTCCTTGCTGGATGAGATGAAGAGTAA CTCATTTAGTGCAGATCTTGTCCTTTACAATGTATGCATAGACTGTTTTGGTAAAGTTGGTAAGGTGGATATGGCTTGGA AATTCTTTCATGAGATGAAAGCACAAGGGTTGGTGCCTGATGATGTGACATATACTAGCATGATAGGAGTTCTTTGCAAG GCTGAGAGGGTAGATGAAGCTGTTGAGCTGTTTGAAGAACTGGATCTCAACAGGAGTGTCCCTTGTGTTTATGCTTATAA TACCATGATTATGGGTTATGGTTCAGTTGGGAAATTTGATGAAGCATACAACTTACTTGAGAGACAAAAGAGAAAGGGAT GTATACCTAGTGTGATAGCATATAACTGCATTCTGACTTGCCTAAGAAGGAAGGGCAATGTAGAGGAAGCGTTGAGGATA TTTGAAGAAATGAAAAAAGATGCAGCACCCAATCTTACAACCTACAATATTTTAATTGACATGCTTTGTAATGCAGGAAA TCTCGAAGCTGCTTTGAAAGTTCAAAACACCATGAAAGAGGCTGGCTTATTCCCTAATATTGTGACTGTAAATATAATGA TTGATCGGCTATGTAAAGCTCAAAGACTTGATGAAGCTTGCTCCATATTTTTGGAATTGGATCATGAAGTTTGTACCCCT GATGCAGTAACATTTTGCTCACTTATTAATGGCTTGGGAAGACATGGCAGGGTAAATGATGCCTATAAGCTTTATGAAAA GATGTTAGATTCCGATCAGCCTCCGAATGTAGTAGTATACACTTCACTTATTAGGACTTTTTTCAAGTGTGGTAGGAAGG AGGATGGTCACAAAATTTTCAGGGAGATGGTGGATAGGGGTTGTTCTCCTGATCTTATGCTCCTTAATACTTACATGGAT TGTGTTTTCAAAGGTGGTGAAATTGAGAAAGGGAGGGCTTTATTTGAAGAAATAAAAGCTCGGGGGTTAGTTCCTGATGC TTGGAGCTACTCAATTTTAATTCATGGACTTGTGAAAGCAGGATGTTCAAAAGAAACATATAAGTTATTTTATGAGATGA AGGAACAAGGATTGCATTTGGACACGCGTGCATACAACGCTGTAATTGATGGATTCTGCAAGTCTGGTAAGGTCAACAAA GCCTACCAACTGTTGGAGGAAATGAAAACAAAGGGTCTTCAACCTACTGTTGTAACTTATGGTTCTGTCATTGATGGACT CGCTAAAATCGACAGGCTCGATGAAGCATACATGTTATTTGAAGAAGCAAAATCAATTGGTGTTGATTTGAATTTAGTTA TCTACAGCAGTCTCATTGATGGGTTTGGGAAGGTGGGAAGAATTGACGAAGCATATTTGATAATGGAGGAGTTGATGCAG AAAGGTCTGACTCCAAACACATACACATGGAGTTGCTTACTTGACGCGTTGGTGAAAGCAGAGGAAATCGATGAAGCTCT TGTCTGCTTTCAAAACATGAAAAACTTGAAATGTTCTCCGAATGATGTTACTTATGCCATTATGATAAATGGCCTTTGCA AGATTAGAAAGTTTAACAAGGCCTTTGTGTTCTGGCAAGAGATGCAGAAACAAGGGTTAAAACCCAACCCTATCACATAC ACCACCATGATTTCAGGATTGGCAAAGGCTGGAAATGTTAGAGAGGCAAGAGATCTATTTGAGAGATTTAAGGCCAGTGG GGGCGTGCCCGATTCTGCTTGTTATAACGCAATGATGGAAGGATTAAGCAATGCCAATAAAGCAATGGATGCTTATGCGC TTTTTGAAGAAACACGACGGAGAGGTTGTCGTATACACAGCAAAACATGTGTTGTTCTTTTAGATGCATTGCATAAGGCT GAGTGCCTTGAGCAAGCAGCCATTGTTGGTGCTGTCTTAAGAGAAATGGCAAGGTCTCAACATGCTACAAGATTATCTTG AGGACAGGTTGTACATAATGTATTGATGTTGGAATAAACCCCAGGCTTCTGGCTTATCTTTCCTCATAATCAATTCTGAA ACCTAGAAGTTACTCATGCAAACTTCTCTCCTAAATTGGTTTTGGCGTTAGATAGAAAATTTTTCAAACATGCACTGAGT GGTGGTCTTCTTTGTAAATCCTTGCCTTCCCCTTGTCTGATCAAGCAACTTGTAAGACAAAGTGAGAGATTTCCAATGTC TCCAGATGTTTGATAAGGTTCATGAATCATGACTAGCCACAAAGGTCATTTATATGAAGGATTTAATTTATGACAGTGAC AAGAGTTTTACATAGACATCCAATCATATCTTGCCATGTTTCTATTTTGGTATGTTCTTATTTTAATTCATTCATGATGT AGCAAAATAGTAAGTCGTAATTGAATGTCTCTGTAAAATGTCAGGTTCCAGAATATTTGGCAGCTTCATGCAAATTAGTC TTGAAAGTGTTATGCTACTCTTTTTTTAACCCTTAAAAGTTCTGTGGGTTTCAGACGGATTGTTTCATGCCTAACGGTTT TCCTGGAAAAAGTACTTATAACTGCATTCATATATCGGTTTTTCATGTTTGCCATTTCTTTATTTTTGTTTTATGTACTT TATTTTTGGTAGAATTGTAATATGGTGTAATGTATTGATTACTGGATCTGCAAGCACTATATTGTATGGCAAAAACTTAA GATATTTTATAAGAATGCATGGCCTGGATACTTGGTTCATAACTTCATATGCATAAGCCACCTTTGTAACTTTTGTAGGT GCAAAAGTGTGCTGAAGATAGAAGTGTGTTGATCACAACATATGTTGGCCAGCATAGCCATCCTCTGCCTCCAACTGCAC AAGCAATGGCATCAACCACATCTGCAGCAGCCTCGATACTTCTCTTAGGATCAATGCCAAGTGCAGATCATGGCCTCATT AATCCAACCATATTAGAAACTGCTTCACTCTCAGCCTCAGCACCAATTCCAACTAGCATTCTTGATCTCACTCAAACTTA TGCATAAAGACTTGGTGATTTGTTGGTGTCACTATTTTGTTTGGAAATACGTGTCGTTCTTATACTTAGGTGTGTCGATA TTGATTTTAATTTATTCAGTGTCATACACCTGAAGGATCTTATATTGATTGAATTTCTAAATATTTTATATTTTATTTGA GCGTAGCTACATTCTCAAACGATCTTCTTCCATCACACTCTCATTCATTGGCTAAAATTCA
CDS sequence (LotjaGi1g1v0017500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAACATGAAGATTCTCTCAAGGGTCCAAGTTCTGAAGTTTCGGTTTGTTCTCCAATCTGGGAAAATTGACCCTTT ATCCAAGAGGTTCTTATGCTCATCATCATCTTCGTCTTCATCTTCAAATGGGTCTCATTTTTCTCCTTCTTCTGAGAAAA AAGTTAACCCATTTATCGATACCCACCATGACAATGCAACAAAATCTGAGAGTGCGAGGAAGACTGTGCTTGATATATGC CGGGTTTTGGAAACTGGTCCTTGGGGACCTTCCATCGAGGATGCTCTCAACTTGTTTGATGAAATGCCTCAACCGGAATT CGTTGTTGGAGTGATGAGGAGGTTGAAGGATGTGAATGTGGCATTGCAGTATTTTAGATGGGTGGAGGGTAAAGCTGAAC AAGTGCATTGCCCAGAAGTTTACAATGCTCTTCTCATGGTTATGGCTAGGACTAGAAACTTGGATTACTTGGAACAGATT CTTGAAGAAATGAGTCTGGCTGGATTTGGACCCTCTAGTACTACTTGTATTGAGCTGGTTACGAGTTTTGTCAAGTCGCG GAAGCTAAGAGAAGCTTTTGGAGTCATTGAAACGATGAGGAAGTTCAAGTTTCGCCCTGCTTTTTCAGCTTACACCACAC TGATTGGTGCCCTCTCTGCATCTAATGAAGCTGATCTCATGCTCAATCTCTTTCATCAAATGCAGGAAATGGGTTATGAA GTGAGCATACATTTGTTTACCACGCTTGTTCGCTCAATTGCCAGGCTGGGCCGCATGGATGCTGCTCTTTCCTTGCTGGA TGAGATGAAGAGTAACTCATTTAGTGCAGATCTTGTCCTTTACAATGTATGCATAGACTGTTTTGGTAAAGTTGGTAAGG TGGATATGGCTTGGAAATTCTTTCATGAGATGAAAGCACAAGGGTTGGTGCCTGATGATGTGACATATACTAGCATGATA GGAGTTCTTTGCAAGGCTGAGAGGGTAGATGAAGCTGTTGAGCTGTTTGAAGAACTGGATCTCAACAGGAGTGTCCCTTG TGTTTATGCTTATAATACCATGATTATGGGTTATGGTTCAGTTGGGAAATTTGATGAAGCATACAACTTACTTGAGAGAC AAAAGAGAAAGGGATGTATACCTAGTGTGATAGCATATAACTGCATTCTGACTTGCCTAAGAAGGAAGGGCAATGTAGAG GAAGCGTTGAGGATATTTGAAGAAATGAAAAAAGATGCAGCACCCAATCTTACAACCTACAATATTTTAATTGACATGCT TTGTAATGCAGGAAATCTCGAAGCTGCTTTGAAAGTTCAAAACACCATGAAAGAGGCTGGCTTATTCCCTAATATTGTGA CTGTAAATATAATGATTGATCGGCTATGTAAAGCTCAAAGACTTGATGAAGCTTGCTCCATATTTTTGGAATTGGATCAT GAAGTTTGTACCCCTGATGCAGTAACATTTTGCTCACTTATTAATGGCTTGGGAAGACATGGCAGGGTAAATGATGCCTA TAAGCTTTATGAAAAGATGTTAGATTCCGATCAGCCTCCGAATGTAGTAGTATACACTTCACTTATTAGGACTTTTTTCA AGTGTGGTAGGAAGGAGGATGGTCACAAAATTTTCAGGGAGATGGTGGATAGGGGTTGTTCTCCTGATCTTATGCTCCTT AATACTTACATGGATTGTGTTTTCAAAGGTGGTGAAATTGAGAAAGGGAGGGCTTTATTTGAAGAAATAAAAGCTCGGGG GTTAGTTCCTGATGCTTGGAGCTACTCAATTTTAATTCATGGACTTGTGAAAGCAGGATGTTCAAAAGAAACATATAAGT TATTTTATGAGATGAAGGAACAAGGATTGCATTTGGACACGCGTGCATACAACGCTGTAATTGATGGATTCTGCAAGTCT GGTAAGGTCAACAAAGCCTACCAACTGTTGGAGGAAATGAAAACAAAGGGTCTTCAACCTACTGTTGTAACTTATGGTTC TGTCATTGATGGACTCGCTAAAATCGACAGGCTCGATGAAGCATACATGTTATTTGAAGAAGCAAAATCAATTGGTGTTG ATTTGAATTTAGTTATCTACAGCAGTCTCATTGATGGGTTTGGGAAGGTGGGAAGAATTGACGAAGCATATTTGATAATG GAGGAGTTGATGCAGAAAGGTCTGACTCCAAACACATACACATGGAGTTGCTTACTTGACGCGTTGGTGAAAGCAGAGGA AATCGATGAAGCTCTTGTCTGCTTTCAAAACATGAAAAACTTGAAATGTTCTCCGAATGATGTTACTTATGCCATTATGA TAAATGGCCTTTGCAAGATTAGAAAGTTTAACAAGGCCTTTGTGTTCTGGCAAGAGATGCAGAAACAAGGGTTAAAACCC AACCCTATCACATACACCACCATGATTTCAGGATTGGCAAAGGCTGGAAATGTTAGAGAGGCAAGAGATCTATTTGAGAG ATTTAAGGCCAGTGGGGGCGTGCCCGATTCTGCTTGTTATAACGCAATGATGGAAGGATTAAGCAATGCCAATAAAGCAA TGGATGCTTATGCGCTTTTTGAAGAAACACGACGGAGAGGTTGTCGTATACACAGCAAAACATGTGTTGTTCTTTTAGAT GCATTGCATAAGGCTGAGTGCCTTGAGCAAGCAGCCATTGTTGGTGCTGTCTTAAGAGAAATGGCAAGGTCTCAACATGC TACAAGATTATCTTGA
Protein sequence (LotjaGi1g1v0017500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNMKILSRVQVLKFRFVLQSGKIDPLSKRFLCSSSSSSSSSNGSHFSPSSEKKVNPFIDTHHDNATKSESARKTVLDIC RVLETGPWGPSIEDALNLFDEMPQPEFVVGVMRRLKDVNVALQYFRWVEGKAEQVHCPEVYNALLMVMARTRNLDYLEQI LEEMSLAGFGPSSTTCIELVTSFVKSRKLREAFGVIETMRKFKFRPAFSAYTTLIGALSASNEADLMLNLFHQMQEMGYE VSIHLFTTLVRSIARLGRMDAALSLLDEMKSNSFSADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTSMI GVLCKAERVDEAVELFEELDLNRSVPCVYAYNTMIMGYGSVGKFDEAYNLLERQKRKGCIPSVIAYNCILTCLRRKGNVE EALRIFEEMKKDAAPNLTTYNILIDMLCNAGNLEAALKVQNTMKEAGLFPNIVTVNIMIDRLCKAQRLDEACSIFLELDH EVCTPDAVTFCSLINGLGRHGRVNDAYKLYEKMLDSDQPPNVVVYTSLIRTFFKCGRKEDGHKIFREMVDRGCSPDLMLL NTYMDCVFKGGEIEKGRALFEEIKARGLVPDAWSYSILIHGLVKAGCSKETYKLFYEMKEQGLHLDTRAYNAVIDGFCKS GKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSIGVDLNLVIYSSLIDGFGKVGRIDEAYLIM EELMQKGLTPNTYTWSCLLDALVKAEEIDEALVCFQNMKNLKCSPNDVTYAIMINGLCKIRKFNKAFVFWQEMQKQGLKP NPITYTTMISGLAKAGNVREARDLFERFKASGGVPDSACYNAMMEGLSNANKAMDAYALFEETRRRGCRIHSKTCVVLLD ALHKAECLEQAAIVGAVLREMARSQHATRLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 36 | 69 | 34 | - | – | |
| MobiDBLite | 36 | 55 | 20 | - | – | |
| Gene3D | 106 | 224 | 119 | 7.2E-18 | ||
| PANTHER | 135 | 270 | 136 | 4.3E-235 | – | |
| PANTHER | 135 | 270 | 136 | 4.3E-235 | – | |
| ProSiteProfiles | 137 | 171 | 35 | 8.583 | ||
| Pfam | 160 | 218 | 59 | 5.3E-6 | ||
| ProSiteProfiles | 172 | 206 | 35 | 8.912 | ||
| ProSiteProfiles | 207 | 241 | 35 | 8.616 | ||
| TIGRFAM | 210 | 242 | 33 | 2.3E-4 | ||
| Gene3D | 225 | 342 | 118 | 2.0E-32 | ||
| ProSiteProfiles | 242 | 276 | 35 | 9.986 | ||
| TIGRFAM | 245 | 277 | 33 | 1.1E-5 | ||
| Pfam | 246 | 273 | 28 | 5.4E-4 | ||
| PANTHER | 265 | 530 | 266 | 4.3E-235 | – | |
| PANTHER | 265 | 530 | 266 | 4.3E-235 | – | |
| Pfam | 277 | 325 | 49 | 7.5E-16 | ||
| ProSiteProfiles | 277 | 311 | 35 | 12.485 | ||
| TIGRFAM | 279 | 312 | 34 | 3.9E-10 | ||
| ProSiteProfiles | 312 | 346 | 35 | 11.389 | ||
| TIGRFAM | 314 | 342 | 29 | 2.1E-6 | ||
| Gene3D | 343 | 412 | 70 | 1.8E-17 | ||
| ProSiteProfiles | 347 | 381 | 35 | 11.74 | ||
| TIGRFAM | 349 | 382 | 34 | 9.1E-7 | ||
| Pfam | 377 | 410 | 34 | 1.0E-6 | ||
| SUPERFAMILY | 381 | 827 | 447 | 9.48E-10 | ||
| ProSiteProfiles | 382 | 412 | 31 | 10.534 | ||
| TIGRFAM | 385 | 411 | 27 | 1.0E-6 | ||
| Gene3D | 413 | 479 | 67 | 2.3E-19 | ||
| Pfam | 415 | 464 | 50 | 2.0E-15 | ||
| ProSiteProfiles | 416 | 450 | 35 | 12.288 | ||
| TIGRFAM | 419 | 452 | 34 | 2.7E-8 | ||
| ProSiteProfiles | 451 | 485 | 35 | 9.964 | ||
| TIGRFAM | 453 | 487 | 35 | 5.4E-6 | ||
| PANTHER | 458 | 557 | 100 | 4.3E-235 | – | |
| PANTHER | 458 | 557 | 100 | 4.3E-235 | – | |
| Gene3D | 480 | 569 | 90 | 1.9E-25 | ||
| Pfam | 483 | 513 | 31 | 2.5E-10 | ||
| ProSiteProfiles | 486 | 520 | 35 | 12.266 | ||
| TIGRFAM | 488 | 522 | 35 | 6.7E-8 | ||
| ProSiteProfiles | 521 | 555 | 35 | 12.77 | ||
| TIGRFAM | 523 | 556 | 34 | 2.1E-8 | ||
| Pfam | 523 | 553 | 31 | 3.9E-5 | ||
| PANTHER | 532 | 898 | 367 | 4.3E-235 | – | |
| PANTHER | 532 | 898 | 367 | 4.3E-235 | – | |
| Pfam | 555 | 604 | 50 | 2.7E-9 | ||
| ProSiteProfiles | 556 | 590 | 35 | 9.58 | ||
| TIGRFAM | 561 | 592 | 32 | 5.6E-5 | ||
| Gene3D | 570 | 675 | 106 | 4.1E-33 | ||
| ProSiteProfiles | 591 | 625 | 35 | 10.863 | ||
| TIGRFAM | 594 | 626 | 33 | 4.6E-7 | ||
| ProSiteProfiles | 626 | 660 | 35 | 14.359 | ||
| Pfam | 626 | 674 | 49 | 1.8E-17 | ||
| TIGRFAM | 629 | 661 | 33 | 6.0E-10 | ||
| ProSiteProfiles | 661 | 695 | 35 | 10.26 | ||
| TIGRFAM | 663 | 689 | 27 | 8.6E-4 | ||
| Gene3D | 676 | 783 | 108 | 3.8E-31 | ||
| ProSiteProfiles | 696 | 730 | 35 | 12.255 | ||
| Pfam | 696 | 744 | 49 | 1.2E-10 | ||
| TIGRFAM | 698 | 732 | 35 | 4.9E-7 | ||
| ProSiteProfiles | 731 | 765 | 35 | 10.95 | ||
| TIGRFAM | 733 | 766 | 34 | 1.0E-7 | ||
| ProSiteProfiles | 766 | 800 | 35 | 12.693 | ||
| TIGRFAM | 768 | 801 | 34 | 2.4E-10 | ||
| Pfam | 768 | 814 | 47 | 3.5E-17 | ||
| Gene3D | 784 | 910 | 127 | 1.9E-29 | ||
| ProSiteProfiles | 801 | 835 | 35 | 12.562 | ||
| TIGRFAM | 803 | 836 | 34 | 2.7E-9 | ||
| Pfam | 835 | 884 | 50 | 2.5E-8 | ||
| ProSiteProfiles | 836 | 870 | 35 | 10.369 | ||
| TIGRFAM | 839 | 869 | 31 | 3.9E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0017500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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