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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0017500 |
| Transcript ID | LotjaGi1g1v0017500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G06920.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920; TrEMBL-Plants: tr|A0A151U2C7|A0A151U2C7_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi1g1v0017500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2190412..2193135) extracted from Lotus japonicus Gifu genome v1.2.
ATTAATTTTCTTCTTGTTGCAGTTCTGAAGTTTCGGTTTGTTCTCCAATCTGGGAAAATTGACCCTTTATCCAAGAGGTT CTTATGCTCATCATCATCTTCGTCTTCATCTTCAAATGGGTCTCATTTTTCTCCTTCTTCTGAGAAAAAAGTTAACCCAT TTATCGATACCCACCATGACAATGCAACAAAATCTGAGAGTGCGAGGAAGACTGTGCTTGATATATGCCGGGTTTTGGAA ACTGGTCCTTGGGGACCTTCCATCGAGGATGCTCTCAACTTGTTTGATGAAATGCCTCAACCGGAATTCGTTGTTGGAGT GATGAGGAGGTTGAAGGATGTGAATGTGGCATTGCAGTATTTTAGATGGGTGGAGGGTAAAGCTGAACAAGTGCATTGCC CAGAAGTTTACAATGCTCTTCTCATGGTTATGGCTAGGACTAGAAACTTGGATTACTTGGAACAGATTCTTGAAGAAATG AGTCTGGCTGGATTTGGACCCTCTAGTACTACTTGTATTGAGCTGGTTACGAGTTTTGTCAAGTCGCGGAAGCTAAGAGA AGCTTTTGGAGTCATTGAAACGATGAGGAAGTTCAAGTTTCGCCCTGCTTTTTCAGCTTACACCACACTGATTGGTGCCC TCTCTGCATCTAATGAAGCTGATCTCATGCTCAATCTCTTTCATCAAATGCAGGAAATGGGTTATGAAGTGAGCATACAT TTGTTTACCACGCTTGTTCGCTCAATTGCCAGGCTGGGCCGCATGGATGCTGCTCTTTCCTTGCTGGATGAGATGAAGAG TAACTCATTTAGTGCAGATCTTGTCCTTTACAATGTATGCATAGACTGTTTTGGTAAAGTTGGTAAGGTGGATATGGCTT GGAAATTCTTTCATGAGATGAAAGCACAAGGGTTGGTGCCTGATGATGTGACATATACTAGCATGATAGGAGTTCTTTGC AAGGCTGAGAGGGTAGATGAAGCTGTTGAGCTGTTTGAAGAACTGGATCTCAACAGGAGTGTCCCTTGTGTTTATGCTTA TAATACCATGATTATGGGTTATGGTTCAGTTGGGAAATTTGATGAAGCATACAACTTACTTGAGAGACAAAAGAGAAAGG GATGTATACCTAGTGTGATAGCATATAACTGCATTCTGACTTGCCTAAGAAGGAAGGGCAATGTAGAGGAAGCGTTGAGG ATATTTGAAGAAATGAAAAAAGATGCAGCACCCAATCTTACAACCTACAATATTTTAATTGACATGCTTTGTAATGCAGG AAATCTCGAAGCTGCTTTGAAAGTTCAAAACACCATGAAAGAGGCTGGCTTATTCCCTAATATTGTGACTGTAAATATAA TGATTGATCGGCTATGTAAAGCTCAAAGACTTGATGAAGCTTGCTCCATATTTTTGGAATTGGATCATGAAGTTTGTACC CCTGATGCAGTAACATTTTGCTCACTTATTAATGGCTTGGGAAGACATGGCAGGGTAAATGATGCCTATAAGCTTTATGA AAAGATGTTAGATTCCGATCAGCCTCCGAATGTAGTAGTATACACTTCACTTATTAGGACTTTTTTCAAGTGTGGTAGGA AGGAGGATGGTCACAAAATTTTCAGGGAGATGGTGGATAGGGGTTGTTCTCCTGATCTTATGCTCCTTAATACTTACATG GATTGTGTTTTCAAAGGTGGTGAAATTGAGAAAGGGAGGGCTTTATTTGAAGAAATAAAAGCTCGGGGGTTAGTTCCTGA TGCTTGGAGCTACTCAATTTTAATTCATGGACTTGTGAAAGCAGGATGTTCAAAAGAAACATATAAGTTATTTTATGAGA TGAAGGAACAAGGATTGCATTTGGACACGCGTGCATACAACGCTGTAATTGATGGATTCTGCAAGTCTGGTAAGGTCAAC AAAGCCTACCAACTGTTGGAGGAAATGAAAACAAAGGGTCTTCAACCTACTGTTGTAACTTATGGTTCTGTCATTGATGG ACTCGCTAAAATCGACAGGCTCGATGAAGCATACATGTTATTTGAAGAAGCAAAATCAATTGGTGTTGATTTGAATTTAG TTATCTACAGCAGTCTCATTGATGGGTTTGGGAAGGTGGGAAGAATTGACGAAGCATATTTGATAATGGAGGAGTTGATG CAGAAAGGTCTGACTCCAAACACATACACATGGAGTTGCTTACTTGACGCGTTGGTGAAAGCAGAGGAAATCGATGAAGC TCTTGTCTGCTTTCAAAACATGAAAAACTTGAAATGTTCTCCGAATGATGTTACTTATGCCATTATGATAAATGGCCTTT GCAAGATTAGAAAGTTTAACAAGGCCTTTGTGTTCTGGCAAGAGATGCAGAAACAAGGGTTAAAACCCAACCCTATCACA TACACCACCATGATTTCAGGATTGGCAAAGGCTGGAAATGTTAGAGAGGCAAGAGATCTATTTGAGAGATTTAAGGCCAG TGGGGGCGTGCCCGATTCTGCTTGTTATAACGCAATGATGGAAGGATTAAGCAATGCCAATAAAGCAATGGATGCTTATG CGCTTTTTGAAGAAACACGACGGAGAGGTTGTCGTATACACAGCAAAACATGTGTTGTTCTTTTAGATGCATTGCATAAG GCTGAGTGCCTTGAGCAAGCAGCCATTGTTGGTGCTGTCTTAAGAGAAATGGCAAGGTCTCAACATGCTACAAGATTATC TTGA
CDS sequence (LotjaGi1g1v0017500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCAACCGGAATTCGTTGTTGGAGTGATGAGGAGGTTGAAGGATGTGAATGTGGCATTGCAGTATTTTAGATGGGT GGAGGGTAAAGCTGAACAAGTGCATTGCCCAGAAGTTTACAATGCTCTTCTCATGGTTATGGCTAGGACTAGAAACTTGG ATTACTTGGAACAGATTCTTGAAGAAATGAGTCTGGCTGGATTTGGACCCTCTAGTACTACTTGTATTGAGCTGGTTACG AGTTTTGTCAAGTCGCGGAAGCTAAGAGAAGCTTTTGGAGTCATTGAAACGATGAGGAAGTTCAAGTTTCGCCCTGCTTT TTCAGCTTACACCACACTGATTGGTGCCCTCTCTGCATCTAATGAAGCTGATCTCATGCTCAATCTCTTTCATCAAATGC AGGAAATGGGTTATGAAGTGAGCATACATTTGTTTACCACGCTTGTTCGCTCAATTGCCAGGCTGGGCCGCATGGATGCT GCTCTTTCCTTGCTGGATGAGATGAAGAGTAACTCATTTAGTGCAGATCTTGTCCTTTACAATGTATGCATAGACTGTTT TGGTAAAGTTGGTAAGGTGGATATGGCTTGGAAATTCTTTCATGAGATGAAAGCACAAGGGTTGGTGCCTGATGATGTGA CATATACTAGCATGATAGGAGTTCTTTGCAAGGCTGAGAGGGTAGATGAAGCTGTTGAGCTGTTTGAAGAACTGGATCTC AACAGGAGTGTCCCTTGTGTTTATGCTTATAATACCATGATTATGGGTTATGGTTCAGTTGGGAAATTTGATGAAGCATA CAACTTACTTGAGAGACAAAAGAGAAAGGGATGTATACCTAGTGTGATAGCATATAACTGCATTCTGACTTGCCTAAGAA GGAAGGGCAATGTAGAGGAAGCGTTGAGGATATTTGAAGAAATGAAAAAAGATGCAGCACCCAATCTTACAACCTACAAT ATTTTAATTGACATGCTTTGTAATGCAGGAAATCTCGAAGCTGCTTTGAAAGTTCAAAACACCATGAAAGAGGCTGGCTT ATTCCCTAATATTGTGACTGTAAATATAATGATTGATCGGCTATGTAAAGCTCAAAGACTTGATGAAGCTTGCTCCATAT TTTTGGAATTGGATCATGAAGTTTGTACCCCTGATGCAGTAACATTTTGCTCACTTATTAATGGCTTGGGAAGACATGGC AGGGTAAATGATGCCTATAAGCTTTATGAAAAGATGTTAGATTCCGATCAGCCTCCGAATGTAGTAGTATACACTTCACT TATTAGGACTTTTTTCAAGTGTGGTAGGAAGGAGGATGGTCACAAAATTTTCAGGGAGATGGTGGATAGGGGTTGTTCTC CTGATCTTATGCTCCTTAATACTTACATGGATTGTGTTTTCAAAGGTGGTGAAATTGAGAAAGGGAGGGCTTTATTTGAA GAAATAAAAGCTCGGGGGTTAGTTCCTGATGCTTGGAGCTACTCAATTTTAATTCATGGACTTGTGAAAGCAGGATGTTC AAAAGAAACATATAAGTTATTTTATGAGATGAAGGAACAAGGATTGCATTTGGACACGCGTGCATACAACGCTGTAATTG ATGGATTCTGCAAGTCTGGTAAGGTCAACAAAGCCTACCAACTGTTGGAGGAAATGAAAACAAAGGGTCTTCAACCTACT GTTGTAACTTATGGTTCTGTCATTGATGGACTCGCTAAAATCGACAGGCTCGATGAAGCATACATGTTATTTGAAGAAGC AAAATCAATTGGTGTTGATTTGAATTTAGTTATCTACAGCAGTCTCATTGATGGGTTTGGGAAGGTGGGAAGAATTGACG AAGCATATTTGATAATGGAGGAGTTGATGCAGAAAGGTCTGACTCCAAACACATACACATGGAGTTGCTTACTTGACGCG TTGGTGAAAGCAGAGGAAATCGATGAAGCTCTTGTCTGCTTTCAAAACATGAAAAACTTGAAATGTTCTCCGAATGATGT TACTTATGCCATTATGATAAATGGCCTTTGCAAGATTAGAAAGTTTAACAAGGCCTTTGTGTTCTGGCAAGAGATGCAGA AACAAGGGTTAAAACCCAACCCTATCACATACACCACCATGATTTCAGGATTGGCAAAGGCTGGAAATGTTAGAGAGGCA AGAGATCTATTTGAGAGATTTAAGGCCAGTGGGGGCGTGCCCGATTCTGCTTGTTATAACGCAATGATGGAAGGATTAAG CAATGCCAATAAAGCAATGGATGCTTATGCGCTTTTTGAAGAAACACGACGGAGAGGTTGTCGTATACACAGCAAAACAT GTGTTGTTCTTTTAGATGCATTGCATAAGGCTGAGTGCCTTGAGCAAGCAGCCATTGTTGGTGCTGTCTTAAGAGAAATG GCAAGGTCTCAACATGCTACAAGATTATCTTGA
Protein sequence (LotjaGi1g1v0017500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQPEFVVGVMRRLKDVNVALQYFRWVEGKAEQVHCPEVYNALLMVMARTRNLDYLEQILEEMSLAGFGPSSTTCIELVT SFVKSRKLREAFGVIETMRKFKFRPAFSAYTTLIGALSASNEADLMLNLFHQMQEMGYEVSIHLFTTLVRSIARLGRMDA ALSLLDEMKSNSFSADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTSMIGVLCKAERVDEAVELFEELDL NRSVPCVYAYNTMIMGYGSVGKFDEAYNLLERQKRKGCIPSVIAYNCILTCLRRKGNVEEALRIFEEMKKDAAPNLTTYN ILIDMLCNAGNLEAALKVQNTMKEAGLFPNIVTVNIMIDRLCKAQRLDEACSIFLELDHEVCTPDAVTFCSLINGLGRHG RVNDAYKLYEKMLDSDQPPNVVVYTSLIRTFFKCGRKEDGHKIFREMVDRGCSPDLMLLNTYMDCVFKGGEIEKGRALFE EIKARGLVPDAWSYSILIHGLVKAGCSKETYKLFYEMKEQGLHLDTRAYNAVIDGFCKSGKVNKAYQLLEEMKTKGLQPT VVTYGSVIDGLAKIDRLDEAYMLFEEAKSIGVDLNLVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNTYTWSCLLDA LVKAEEIDEALVCFQNMKNLKCSPNDVTYAIMINGLCKIRKFNKAFVFWQEMQKQGLKPNPITYTTMISGLAKAGNVREA RDLFERFKASGGVPDSACYNAMMEGLSNANKAMDAYALFEETRRRGCRIHSKTCVVLLDALHKAECLEQAAIVGAVLREM ARSQHATRLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 8 | 170 | 163 | 2.0E-27 | ||
| PANTHER | 15 | 238 | 224 | 6.3E-230 | – | |
| ProSiteProfiles | 36 | 70 | 35 | 8.583 | ||
| Pfam | 59 | 117 | 59 | 4.5E-6 | ||
| ProSiteProfiles | 71 | 105 | 35 | 8.912 | ||
| ProSiteProfiles | 106 | 140 | 35 | 8.616 | ||
| TIGRFAM | 109 | 141 | 33 | 2.0E-4 | ||
| ProSiteProfiles | 141 | 175 | 35 | 9.986 | ||
| TIGRFAM | 144 | 176 | 33 | 9.3E-6 | ||
| Pfam | 145 | 172 | 28 | 4.7E-4 | ||
| Gene3D | 171 | 240 | 70 | 3.0E-19 | ||
| ProSiteProfiles | 176 | 210 | 35 | 12.485 | ||
| Pfam | 176 | 224 | 49 | 6.5E-16 | ||
| TIGRFAM | 178 | 211 | 34 | 3.4E-10 | ||
| ProSiteProfiles | 211 | 245 | 35 | 11.389 | ||
| TIGRFAM | 213 | 241 | 29 | 1.9E-6 | ||
| Gene3D | 241 | 311 | 71 | 1.4E-17 | ||
| ProSiteProfiles | 246 | 280 | 35 | 11.74 | ||
| TIGRFAM | 248 | 281 | 34 | 7.9E-7 | ||
| PANTHER | 248 | 374 | 127 | 6.3E-230 | – | |
| Pfam | 276 | 309 | 34 | 9.1E-7 | ||
| SUPERFAMILY | 280 | 726 | 447 | 6.45E-10 | ||
| ProSiteProfiles | 281 | 311 | 31 | 10.534 | ||
| TIGRFAM | 284 | 310 | 27 | 8.8E-7 | ||
| PANTHER | 310 | 414 | 105 | 6.3E-230 | – | |
| Gene3D | 312 | 378 | 67 | 1.9E-19 | ||
| Pfam | 314 | 363 | 50 | 1.7E-15 | ||
| ProSiteProfiles | 315 | 349 | 35 | 12.288 | ||
| TIGRFAM | 318 | 351 | 34 | 2.3E-8 | ||
| ProSiteProfiles | 350 | 384 | 35 | 9.964 | ||
| TIGRFAM | 352 | 386 | 35 | 4.7E-6 | ||
| Gene3D | 379 | 469 | 91 | 8.7E-26 | ||
| PANTHER | 382 | 589 | 208 | 6.3E-230 | – | |
| Pfam | 382 | 412 | 31 | 2.2E-10 | ||
| ProSiteProfiles | 385 | 419 | 35 | 12.266 | ||
| TIGRFAM | 387 | 421 | 35 | 5.8E-8 | ||
| ProSiteProfiles | 420 | 454 | 35 | 12.77 | ||
| Pfam | 422 | 452 | 31 | 3.4E-5 | ||
| TIGRFAM | 422 | 455 | 34 | 1.8E-8 | ||
| Pfam | 454 | 503 | 50 | 2.3E-9 | ||
| ProSiteProfiles | 455 | 489 | 35 | 9.58 | ||
| TIGRFAM | 460 | 491 | 32 | 4.9E-5 | ||
| Gene3D | 470 | 588 | 119 | 6.6E-37 | ||
| PANTHER | 489 | 623 | 135 | 6.3E-230 | – | |
| ProSiteProfiles | 490 | 524 | 35 | 10.863 | ||
| TIGRFAM | 493 | 525 | 33 | 4.0E-7 | ||
| ProSiteProfiles | 525 | 559 | 35 | 14.359 | ||
| Pfam | 525 | 573 | 49 | 1.6E-17 | ||
| TIGRFAM | 528 | 560 | 33 | 5.3E-10 | ||
| ProSiteProfiles | 560 | 594 | 35 | 10.26 | ||
| TIGRFAM | 562 | 588 | 27 | 7.5E-4 | ||
| PANTHER | 578 | 793 | 216 | 6.3E-230 | – | |
| Gene3D | 589 | 657 | 69 | 3.0E-17 | ||
| ProSiteProfiles | 595 | 629 | 35 | 12.255 | ||
| Pfam | 595 | 643 | 49 | 1.1E-10 | ||
| TIGRFAM | 597 | 631 | 35 | 4.2E-7 | ||
| ProSiteProfiles | 630 | 664 | 35 | 10.95 | ||
| TIGRFAM | 632 | 665 | 34 | 8.8E-8 | ||
| Gene3D | 658 | 729 | 72 | 9.4E-23 | ||
| ProSiteProfiles | 665 | 699 | 35 | 12.693 | ||
| Pfam | 667 | 713 | 47 | 3.0E-17 | ||
| TIGRFAM | 667 | 700 | 34 | 2.1E-10 | ||
| ProSiteProfiles | 700 | 734 | 35 | 12.562 | ||
| TIGRFAM | 702 | 735 | 34 | 2.3E-9 | ||
| Gene3D | 730 | 804 | 75 | 1.6E-8 | ||
| Pfam | 734 | 783 | 50 | 2.2E-8 | ||
| ProSiteProfiles | 735 | 769 | 35 | 10.369 | ||
| TIGRFAM | 738 | 768 | 31 | 3.4E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0017500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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